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Asym. Unit
Info
Asym.Unit (1.5 MB)
Biol.Unit 1, α-C (1.5 MB)
Biol.Unit 1 (1.5 MB)
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(1)
Title
:
CRYOEM STRUCTURE OF 40S-EIF1A-EIF1 COMPLEX FROM YEAST
Authors
:
J. L. Llacer, T. Hussain, V. Ramakrishnan
Date
:
17 Jun 15 (Deposition) - 12 Aug 15 (Release) - 02 Sep 15 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
3.46
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,2
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,2 (1x)
Keywords
:
Eukaryotic Translation Initiation, 48S, Small Ribosome Subunit, 40S, 43S, Translation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. L. Llacer, T. Hussain, L. Marler, C. E. Aitken, A. Thakur, J. R. Lorsch, A. G. Hinnebusch, V. Ramakrishnan
Conformational Differences Between Open And Closed States O The Eukaryotic Translation Initiation Complex.
Mol. Cell V. 59 399 2015
[
close entry info
]
Hetero Components
(2, 83)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1aa: MAGNESIUM ION (MGaa)
1ab: MAGNESIUM ION (MGab)
1ac: MAGNESIUM ION (MGac)
1ad: MAGNESIUM ION (MGad)
1ae: MAGNESIUM ION (MGae)
1af: MAGNESIUM ION (MGaf)
1ag: MAGNESIUM ION (MGag)
1ah: MAGNESIUM ION (MGah)
1ai: MAGNESIUM ION (MGai)
1aj: MAGNESIUM ION (MGaj)
1ak: MAGNESIUM ION (MGak)
1al: MAGNESIUM ION (MGal)
1am: MAGNESIUM ION (MGam)
1an: MAGNESIUM ION (MGan)
1ao: MAGNESIUM ION (MGao)
1ap: MAGNESIUM ION (MGap)
1aq: MAGNESIUM ION (MGaq)
1ar: MAGNESIUM ION (MGar)
1as: MAGNESIUM ION (MGas)
1at: MAGNESIUM ION (MGat)
1au: MAGNESIUM ION (MGau)
1av: MAGNESIUM ION (MGav)
1aw: MAGNESIUM ION (MGaw)
1ax: MAGNESIUM ION (MGax)
1ay: MAGNESIUM ION (MGay)
1az: MAGNESIUM ION (MGaz)
1b: MAGNESIUM ION (MGb)
1ba: MAGNESIUM ION (MGba)
1bb: MAGNESIUM ION (MGbb)
1bc: MAGNESIUM ION (MGbc)
1bd: MAGNESIUM ION (MGbd)
1be: MAGNESIUM ION (MGbe)
1bf: MAGNESIUM ION (MGbf)
1bg: MAGNESIUM ION (MGbg)
1bh: MAGNESIUM ION (MGbh)
1bi: MAGNESIUM ION (MGbi)
1bj: MAGNESIUM ION (MGbj)
1bk: MAGNESIUM ION (MGbk)
1bl: MAGNESIUM ION (MGbl)
1bm: MAGNESIUM ION (MGbm)
1bn: MAGNESIUM ION (MGbn)
1bo: MAGNESIUM ION (MGbo)
1bp: MAGNESIUM ION (MGbp)
1bq: MAGNESIUM ION (MGbq)
1br: MAGNESIUM ION (MGbr)
1bs: MAGNESIUM ION (MGbs)
1bt: MAGNESIUM ION (MGbt)
1bu: MAGNESIUM ION (MGbu)
1bv: MAGNESIUM ION (MGbv)
1bw: MAGNESIUM ION (MGbw)
1bx: MAGNESIUM ION (MGbx)
1by: MAGNESIUM ION (MGby)
1bz: MAGNESIUM ION (MGbz)
1c: MAGNESIUM ION (MGc)
1ca: MAGNESIUM ION (MGca)
1cb: MAGNESIUM ION (MGcb)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
1m: MAGNESIUM ION (MGm)
1n: MAGNESIUM ION (MGn)
1o: MAGNESIUM ION (MGo)
1p: MAGNESIUM ION (MGp)
1q: MAGNESIUM ION (MGq)
1r: MAGNESIUM ION (MGr)
1s: MAGNESIUM ION (MGs)
1t: MAGNESIUM ION (MGt)
1u: MAGNESIUM ION (MGu)
1v: MAGNESIUM ION (MGv)
1w: MAGNESIUM ION (MGw)
1x: MAGNESIUM ION (MGx)
1y: MAGNESIUM ION (MGy)
1z: MAGNESIUM ION (MGz)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
80
Ligand/Ion
MAGNESIUM ION
2
ZN
3
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(66, 66)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
G 2:361
BINDING SITE FOR RESIDUE MG 2 1801
02
AC2
SOFTWARE
G 2:95 , G 2:402
BINDING SITE FOR RESIDUE MG 2 1802
03
AC3
SOFTWARE
G 2:551 , A 2:554 , A 2:555
BINDING SITE FOR RESIDUE MG 2 1803
04
AC4
SOFTWARE
A 2:100
BINDING SITE FOR RESIDUE MG 2 1804
05
AC5
SOFTWARE
A 2:1024
BINDING SITE FOR RESIDUE MG 2 1805
06
AC6
SOFTWARE
C 2:49 , A 2:424
BINDING SITE FOR RESIDUE MG 2 1807
07
AC7
SOFTWARE
G 2:1329
BINDING SITE FOR RESIDUE MG 2 1809
08
AC8
SOFTWARE
A 2:928
BINDING SITE FOR RESIDUE MG 2 1811
09
AC9
SOFTWARE
A 2:1761 , G 2:1765 , G 2:1766 , U 2:1768 , U 2:1769
BINDING SITE FOR RESIDUE MG 2 1812
10
BC1
SOFTWARE
A 2:386 , A 2:400
BINDING SITE FOR RESIDUE MG 2 1814
11
BC2
SOFTWARE
G 2:16
BINDING SITE FOR RESIDUE MG 2 1815
12
BC3
SOFTWARE
A 2:377 , U 2:378
BINDING SITE FOR RESIDUE MG 2 1816
13
BC4
SOFTWARE
A 2:28
BINDING SITE FOR RESIDUE MG 2 1817
14
BC5
SOFTWARE
G 2:370 , A 2:604 , G 2:606
BINDING SITE FOR RESIDUE MG 2 1818
15
BC6
SOFTWARE
U 2:1003
BINDING SITE FOR RESIDUE MG 2 1819
16
BC7
SOFTWARE
C 2:426
BINDING SITE FOR RESIDUE MG 2 1820
17
BC8
SOFTWARE
U 2:44 , A 2:47
BINDING SITE FOR RESIDUE MG 2 1821
18
BC9
SOFTWARE
U 2:1759 , A 2:1760 , A 2:1761 , G 2:1765 , G 2:1766
BINDING SITE FOR RESIDUE MG 2 1822
19
CC1
SOFTWARE
U 2:617 , A 2:618 , A 2:619 , A 2:620
BINDING SITE FOR RESIDUE MG 2 1823
20
CC2
SOFTWARE
U 2:562 , A 2:579
BINDING SITE FOR RESIDUE MG 2 1824
21
CC3
SOFTWARE
A 2:618
BINDING SITE FOR RESIDUE MG 2 1825
22
CC4
SOFTWARE
G 2:1327 , G 2:1329
BINDING SITE FOR RESIDUE MG 2 1826
23
CC5
SOFTWARE
A 2:622
BINDING SITE FOR RESIDUE MG 2 1827
24
CC6
SOFTWARE
A 2:100 , U 2:101 , U 2:102 , C 2:360
BINDING SITE FOR RESIDUE MG 2 1828
25
CC7
SOFTWARE
G 2:1108 , G 2:1109
BINDING SITE FOR RESIDUE MG 2 1830
26
CC8
SOFTWARE
U 2:1768
BINDING SITE FOR RESIDUE MG 2 1831
27
CC9
SOFTWARE
G 2:95
BINDING SITE FOR RESIDUE MG 2 1832
28
DC1
SOFTWARE
G 2:1670 , G 2:1671 , G 2:1725 , U 2:1726
BINDING SITE FOR RESIDUE MG 2 1833
29
DC2
SOFTWARE
U 2:1628 , G 2:1791
BINDING SITE FOR RESIDUE MG 2 1834
30
DC3
SOFTWARE
U 2:169 , U 2:266 , C 2:267 , GLN G:176
BINDING SITE FOR RESIDUE MG 2 1835
31
DC4
SOFTWARE
A 2:459 , G 2:460
BINDING SITE FOR RESIDUE MG 2 1836
32
DC5
SOFTWARE
G 2:466
BINDING SITE FOR RESIDUE MG 2 1837
33
DC6
SOFTWARE
U 2:1302
BINDING SITE FOR RESIDUE MG 2 1841
34
DC7
SOFTWARE
A 2:978
BINDING SITE FOR RESIDUE MG 2 1842
35
DC8
SOFTWARE
A 2:760
BINDING SITE FOR RESIDUE MG 2 1844
36
DC9
SOFTWARE
U 2:8 , G 2:1139
BINDING SITE FOR RESIDUE MG 2 1845
37
EC1
SOFTWARE
A 2:514 , C 2:530
BINDING SITE FOR RESIDUE MG 2 1846
38
EC2
SOFTWARE
U 2:988 , C 2:989
BINDING SITE FOR RESIDUE MG 2 1849
39
EC3
SOFTWARE
A 2:212
BINDING SITE FOR RESIDUE MG 2 1850
40
EC4
SOFTWARE
U 2:934
BINDING SITE FOR RESIDUE MG 2 1852
41
EC5
SOFTWARE
G 2:1392
BINDING SITE FOR RESIDUE MG 2 1854
42
EC6
SOFTWARE
C 2:1158 , U 2:1282
BINDING SITE FOR RESIDUE MG 2 1855
43
EC7
SOFTWARE
A 2:1467 , ASN T:85
BINDING SITE FOR RESIDUE MG 2 1856
44
EC8
SOFTWARE
A 2:1201 , C 2:1455
BINDING SITE FOR RESIDUE MG 2 1857
45
EC9
SOFTWARE
G 2:1200 , A 2:1598 , C 2:1600
BINDING SITE FOR RESIDUE MG 2 1858
46
FC1
SOFTWARE
C 2:1429
BINDING SITE FOR RESIDUE MG 2 1859
47
FC2
SOFTWARE
A 2:1195 , C 2:1196 , LYS U:77
BINDING SITE FOR RESIDUE MG 2 1860
48
FC3
SOFTWARE
G 2:1267 , U 2:1268
BINDING SITE FOR RESIDUE MG 2 1861
49
FC4
SOFTWARE
G 2:1272 , C 2:1273 , G 2:1426
BINDING SITE FOR RESIDUE MG 2 1862
50
FC5
SOFTWARE
G 2:1539 , C 2:1566
BINDING SITE FOR RESIDUE MG 2 1863
51
FC6
SOFTWARE
U 2:1518 , U 2:1520
BINDING SITE FOR RESIDUE MG 2 1864
52
FC7
SOFTWARE
C 2:1273 , G 2:1426 , G 2:1427
BINDING SITE FOR RESIDUE MG 2 1865
53
FC8
SOFTWARE
A 2:1201 , A 2:1202 , C 2:1597
BINDING SITE FOR RESIDUE MG 2 1866
54
FC9
SOFTWARE
U 2:118 , ASN I:52
BINDING SITE FOR RESIDUE MG 2 1868
55
GC1
SOFTWARE
C 2:249 , A 2:250
BINDING SITE FOR RESIDUE MG 2 1869
56
GC2
SOFTWARE
C 2:423
BINDING SITE FOR RESIDUE MG 2 1870
57
GC3
SOFTWARE
A 2:603
BINDING SITE FOR RESIDUE MG 2 1871
58
GC4
SOFTWARE
A 2:634 , A 2:635
BINDING SITE FOR RESIDUE MG 2 1872
59
GC5
SOFTWARE
G 2:894 , A 2:914 , U 2:916
BINDING SITE FOR RESIDUE MG 2 1874
60
GC6
SOFTWARE
G 2:941 , GLY a:16
BINDING SITE FOR RESIDUE MG 2 1875
61
GC7
SOFTWARE
U 2:967
BINDING SITE FOR RESIDUE MG 2 1876
62
GC8
SOFTWARE
A 2:970
BINDING SITE FOR RESIDUE MG 2 1877
63
GC9
SOFTWARE
CYS a:23 , CYS a:26 , CYS a:74 , CYS a:77
BINDING SITE FOR RESIDUE ZN a 500
64
HC1
SOFTWARE
CYS b:37 , GLY b:39 , CYS b:40 , CYS b:59
BINDING SITE FOR RESIDUE ZN b 101
65
HC2
SOFTWARE
TYR f:85 , THR f:87
BINDING SITE FOR RESIDUE MG f 201
66
HC3
SOFTWARE
CYS f:121 , ILE f:128 , CYS f:139 , LYS f:141 , CYS f:142
BINDING SITE FOR RESIDUE ZN f 202
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Chain S
Chain T
Chain U
Chain V
Chain W
Chain X
Chain Y
Chain Z
Chain a
Chain b
Chain c
Chain d
Chain e
Chain f
Chain g
Chain h
Chain i
Chain j
Chain 2
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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