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3J80
Asym. Unit
Info
Asym.Unit (1.5 MB)
Biol.Unit 1, α-C (1.5 MB)
Biol.Unit 1 (1.5 MB)
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(1)
Title
:
CRYOEM STRUCTURE OF 40S-EIF1-EIF1A PREINITIATION COMPLEX
Authors
:
T. Hussain, J. L. Llacer, I. S. Fernandez, C. G. Savva, V. Ramakrishnan
Date
:
28 Aug 14 (Deposition) - 05 Nov 14 (Release) - 24 Dec 14 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
3.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,2
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,2 (1x)
Keywords
:
Small Ribosome Subunit, Eukaryotic Translation Initiation, Ribosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Hussain, J. L. Llacer, I. S. Fernandez, A. Munoz, P. Martin-Marcos, C. G. Savva, J. R. Lorsch, A. G. Hinnebusch, V. Ramakrishnan
Structural Changes Enable Start Codon Recognition By The Eukaryotic Translation Initiation Complex.
Cell(Cambridge, Mass. ) V. 159 597 2014
[
close entry info
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Hetero Components
(2, 70)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1aa: MAGNESIUM ION (MGaa)
1ab: MAGNESIUM ION (MGab)
1ac: MAGNESIUM ION (MGac)
1ad: MAGNESIUM ION (MGad)
1ae: MAGNESIUM ION (MGae)
1af: MAGNESIUM ION (MGaf)
1ag: MAGNESIUM ION (MGag)
1ah: MAGNESIUM ION (MGah)
1ai: MAGNESIUM ION (MGai)
1aj: MAGNESIUM ION (MGaj)
1ak: MAGNESIUM ION (MGak)
1al: MAGNESIUM ION (MGal)
1am: MAGNESIUM ION (MGam)
1an: MAGNESIUM ION (MGan)
1ao: MAGNESIUM ION (MGao)
1ap: MAGNESIUM ION (MGap)
1aq: MAGNESIUM ION (MGaq)
1ar: MAGNESIUM ION (MGar)
1as: MAGNESIUM ION (MGas)
1at: MAGNESIUM ION (MGat)
1au: MAGNESIUM ION (MGau)
1av: MAGNESIUM ION (MGav)
1aw: MAGNESIUM ION (MGaw)
1ax: MAGNESIUM ION (MGax)
1ay: MAGNESIUM ION (MGay)
1az: MAGNESIUM ION (MGaz)
1b: MAGNESIUM ION (MGb)
1ba: MAGNESIUM ION (MGba)
1bb: MAGNESIUM ION (MGbb)
1bc: MAGNESIUM ION (MGbc)
1bd: MAGNESIUM ION (MGbd)
1be: MAGNESIUM ION (MGbe)
1bf: MAGNESIUM ION (MGbf)
1bg: MAGNESIUM ION (MGbg)
1bh: MAGNESIUM ION (MGbh)
1bi: MAGNESIUM ION (MGbi)
1bj: MAGNESIUM ION (MGbj)
1bk: MAGNESIUM ION (MGbk)
1bl: MAGNESIUM ION (MGbl)
1bm: MAGNESIUM ION (MGbm)
1bn: MAGNESIUM ION (MGbn)
1bo: MAGNESIUM ION (MGbo)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
1m: MAGNESIUM ION (MGm)
1n: MAGNESIUM ION (MGn)
1o: MAGNESIUM ION (MGo)
1p: MAGNESIUM ION (MGp)
1q: MAGNESIUM ION (MGq)
1r: MAGNESIUM ION (MGr)
1s: MAGNESIUM ION (MGs)
1t: MAGNESIUM ION (MGt)
1u: MAGNESIUM ION (MGu)
1v: MAGNESIUM ION (MGv)
1w: MAGNESIUM ION (MGw)
1x: MAGNESIUM ION (MGx)
1y: MAGNESIUM ION (MGy)
1z: MAGNESIUM ION (MGz)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
67
Ligand/Ion
MAGNESIUM ION
2
ZN
3
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(60, 60)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
G 2:361 , G 2:362
BINDING SITE FOR RESIDUE MG 2 1801
02
AC2
SOFTWARE
A 2:93 , C 2:401 , G 2:402 , ARG E:3
BINDING SITE FOR RESIDUE MG 2 1802
03
AC3
SOFTWARE
G 2:552 , A 2:554 , A 2:555
BINDING SITE FOR RESIDUE MG 2 1803
04
AC4
SOFTWARE
A 2:100 , C 2:360
BINDING SITE FOR RESIDUE MG 2 1804
05
AC5
SOFTWARE
G 2:623 , A 2:1024
BINDING SITE FOR RESIDUE MG 2 1805
06
AC6
SOFTWARE
C 2:49
BINDING SITE FOR RESIDUE MG 2 1807
07
AC7
SOFTWARE
G 2:1329 , C 2:1331 , C 2:1418
BINDING SITE FOR RESIDUE MG 2 1809
08
AC8
SOFTWARE
U 2:9 , G 2:10
BINDING SITE FOR RESIDUE MG 2 1810
09
AC9
SOFTWARE
A 2:928
BINDING SITE FOR RESIDUE MG 2 1811
10
BC1
SOFTWARE
A 2:1761 , G 2:1765 , G 2:1766 , U 2:1769
BINDING SITE FOR RESIDUE MG 2 1812
11
BC2
SOFTWARE
G 2:547 , G 2:548
BINDING SITE FOR RESIDUE MG 2 1813
12
BC3
SOFTWARE
A 2:400
BINDING SITE FOR RESIDUE MG 2 1814
13
BC4
SOFTWARE
G 2:16
BINDING SITE FOR RESIDUE MG 2 1815
14
BC5
SOFTWARE
G 2:362 , A 2:377 , U 2:378
BINDING SITE FOR RESIDUE MG 2 1816
15
BC6
SOFTWARE
A 2:28
BINDING SITE FOR RESIDUE MG 2 1817
16
BC7
SOFTWARE
A 2:604 , G 2:606
BINDING SITE FOR RESIDUE MG 2 1818
17
BC8
SOFTWARE
A 2:997 , U 2:1003
BINDING SITE FOR RESIDUE MG 2 1819
18
BC9
SOFTWARE
C 2:426 , G 2:428
BINDING SITE FOR RESIDUE MG 2 1820
19
CC1
SOFTWARE
U 2:44 , A 2:47
BINDING SITE FOR RESIDUE MG 2 1821
20
CC2
SOFTWARE
U 2:1759 , A 2:1760 , A 2:1761 , G 2:1765 , G 2:1766
BINDING SITE FOR RESIDUE MG 2 1822
21
CC3
SOFTWARE
A 2:618 , A 2:619 , A 2:620
BINDING SITE FOR RESIDUE MG 2 1823
22
CC4
SOFTWARE
A 2:579
BINDING SITE FOR RESIDUE MG 2 1824
23
CC5
SOFTWARE
U 2:617 , A 2:618
BINDING SITE FOR RESIDUE MG 2 1825
24
CC6
SOFTWARE
G 2:1327 , G 2:1329
BINDING SITE FOR RESIDUE MG 2 1826
25
CC7
SOFTWARE
A 2:622
BINDING SITE FOR RESIDUE MG 2 1827
26
CC8
SOFTWARE
A 2:100 , U 2:101 , U 2:102 , C 2:360
BINDING SITE FOR RESIDUE MG 2 1828
27
CC9
SOFTWARE
G 2:20 , U 2:21 , A 2:604 , LYS X:110
BINDING SITE FOR RESIDUE MG 2 1829
28
DC1
SOFTWARE
G 2:1108 , G 2:1109
BINDING SITE FOR RESIDUE MG 2 1830
29
DC2
SOFTWARE
U 2:1768
BINDING SITE FOR RESIDUE MG 2 1831
30
DC3
SOFTWARE
G 2:95
BINDING SITE FOR RESIDUE MG 2 1832
31
DC4
SOFTWARE
G 2:1671 , C 2:1672 , G 2:1725 , U 2:1726
BINDING SITE FOR RESIDUE MG 2 1833
32
DC5
SOFTWARE
G 2:1627 , U 2:1628 , G 2:1791
BINDING SITE FOR RESIDUE MG 2 1834
33
DC6
SOFTWARE
C 2:267 , GLN G:176
BINDING SITE FOR RESIDUE MG 2 1835
34
DC7
SOFTWARE
A 2:459 , G 2:460
BINDING SITE FOR RESIDUE MG 2 1836
35
DC8
SOFTWARE
G 2:466
BINDING SITE FOR RESIDUE MG 2 1837
36
DC9
SOFTWARE
U 2:1302
BINDING SITE FOR RESIDUE MG 2 1841
37
EC1
SOFTWARE
A 2:978
BINDING SITE FOR RESIDUE MG 2 1842
38
EC2
SOFTWARE
U 2:759 , A 2:760 , G 2:761
BINDING SITE FOR RESIDUE MG 2 1844
39
EC3
SOFTWARE
G 2:1139
BINDING SITE FOR RESIDUE MG 2 1845
40
EC4
SOFTWARE
A 2:514 , G 2:515 , C 2:529
BINDING SITE FOR RESIDUE MG 2 1846
41
EC5
SOFTWARE
U 2:988
BINDING SITE FOR RESIDUE MG 2 1849
42
EC6
SOFTWARE
A 2:212 , G 2:213
BINDING SITE FOR RESIDUE MG 2 1850
43
EC7
SOFTWARE
G 2:875
BINDING SITE FOR RESIDUE MG 2 1852
44
EC8
SOFTWARE
G 2:382
BINDING SITE FOR RESIDUE MG 2 1853
45
EC9
SOFTWARE
G 2:1393 , U 2:1394 , C 2:1401 , C 2:1402
BINDING SITE FOR RESIDUE MG 2 1854
46
FC1
SOFTWARE
U 2:1282
BINDING SITE FOR RESIDUE MG 2 1855
47
FC2
SOFTWARE
A 2:1467
BINDING SITE FOR RESIDUE MG 2 1856
48
FC3
SOFTWARE
C 2:1454 , C 2:1455
BINDING SITE FOR RESIDUE MG 2 1858
49
FC4
SOFTWARE
A 2:1195 , A 2:1598 , C 2:1600
BINDING SITE FOR RESIDUE MG 2 1859
50
FC5
SOFTWARE
U 2:1435
BINDING SITE FOR RESIDUE MG 2 1860
51
FC6
SOFTWARE
A 2:1195 , C 2:1196 , LYS U:77
BINDING SITE FOR RESIDUE MG 2 1861
52
FC7
SOFTWARE
U 2:1268 , U 2:1430
BINDING SITE FOR RESIDUE MG 2 1862
53
FC8
SOFTWARE
G 2:1272 , C 2:1273 , G 2:1426
BINDING SITE FOR RESIDUE MG 2 1863
54
FC9
SOFTWARE
U 2:1536 , G 2:1537 , G 2:1539
BINDING SITE FOR RESIDUE MG 2 1864
55
GC1
SOFTWARE
U 2:1518 , U 2:1520
BINDING SITE FOR RESIDUE MG 2 1865
56
GC2
SOFTWARE
C 2:1273 , G 2:1426 , G 2:1427
BINDING SITE FOR RESIDUE MG 2 1866
57
GC3
SOFTWARE
A 2:1201 , A 2:1202
BINDING SITE FOR RESIDUE MG 2 1867
58
GC4
SOFTWARE
CYS a:23 , CYS a:26 , CYS a:74 , CYS a:77
BINDING SITE FOR RESIDUE ZN a 500
59
GC5
SOFTWARE
VAL b:35 , LYS b:36 , CYS b:37 , ASN b:42 , THR b:44
BINDING SITE FOR RESIDUE ZN b 101
60
GC6
SOFTWARE
CYS f:121 , CYS f:139 , CYS f:142
BINDING SITE FOR RESIDUE ZN f 501
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(12, 12)
Info
All PROSITE Patterns/Profiles
01: RIBOSOMAL_S21E (V:11-19)
02: RIBOSOMAL_S2_1 (A:14-25)
03: S1_IF1_TYPE (i:22-96)
04: SUI1 (j:26-96)
05: IF1A (i:41-63)
06: RIBOSOMAL_S6E (G:52-63)
07: RIBOSOMAL_S28E (c:58-66)
08: RIBOSOMAL_S3AE (B:61-73)
09: RIBOSOMAL_S9 (Q:71-89)
10: RIBOSOMAL_S8 (W:100-117)
11: RIBOSOMAL_S11 (O:102-124)
12: RIBOSOMAL_S2_2 (A:118-142)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_S21E
PS00996
Ribosomal protein S21e signature.
RS21_KLULA
11-19
1
V:11-19
2
RIBOSOMAL_S2_1
PS00962
Ribosomal protein S2 signature 1.
RSSA_KLULA
14-25
1
A:14-25
3
S1_IF1_TYPE
PS50832
S1 domain IF1 type profile.
IF1A_YEAST
22-96
1
i:22-96
4
SUI1
PS50296
Translation initiation factor SUI1 family profile.
SUI1_YEAST
26-96
1
j:26-96
5
IF1A
PS01262
Eukaryotic initiation factor 1A signature.
IF1A_YEAST
41-63
1
i:41-63
6
RIBOSOMAL_S6E
PS00578
Ribosomal protein S6e signature.
RS6_KLULA
52-63
1
G:52-63
7
RIBOSOMAL_S28E
PS00961
Ribosomal protein S28e signature.
RS28_KLULA
58-66
1
c:58-66
8
RIBOSOMAL_S3AE
PS01191
Ribosomal protein S3Ae signature.
RS3A_KLULA
61-73
1
B:61-73
9
RIBOSOMAL_S9
PS00360
Ribosomal protein S9 signature.
RS16_KLULA
71-89
1
Q:71-89
10
RIBOSOMAL_S8
PS00053
Ribosomal protein S8 signature.
RS22_KLULA
100-117
1
W:100-117
11
RIBOSOMAL_S11
PS00054
Ribosomal protein S11 signature.
RS14_KLULA
102-124
1
O:102-124
12
RIBOSOMAL_S2_2
PS00963
Ribosomal protein S2 signature 2.
RSSA_KLULA
118-142
1
A:118-142
[
close PROSITE info
]
Exons
(1, 1)
Info
All Exons
Exon 1.1 (j:23-108)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YNL244C
1
YNL244C.1
XIV:187497-187171
327
SUI1_YEAST
1-108
108
1
j:23-108
86
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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