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3J6F
Asym. Unit
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Asym.Unit (1.0 MB)
Biol.Unit 1, α-C (1.0 MB)
Biol.Unit 1 (1.0 MB)
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(1)
Title
:
MINIMIZED AVERAGE STRUCTURE OF GDP-BOUND DYNAMIC MICROTUBULES
Authors
:
G. M. Alushin, G. C. Lander, E. H. Kellogg, R. Zhang, D. Baker, E. Nogales
Date
:
19 Feb 14 (Deposition) - 04 Jun 14 (Release) - 04 Jun 14 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
4.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R (1x)
Keywords
:
Microtubule, Gdp, Dynamic, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. M. Alushin, G. C. Lander, E. H. Kellogg, R. Zhang, D. Baker, E. Nogale
High-Resolution Microtubule Structures Reveal The Structura Transitions In Alpha Beta-Tubulin Upon Gtp Hydrolysis.
Cell(Cambridge, Mass. ) V. 157 1117 2014
[
close entry info
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Hetero Components
(3, 27)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
1c: GUANOSINE-5'-DIPHOSPHATE (GDPc)
1d: GUANOSINE-5'-DIPHOSPHATE (GDPd)
1e: GUANOSINE-5'-DIPHOSPHATE (GDPe)
1f: GUANOSINE-5'-DIPHOSPHATE (GDPf)
1g: GUANOSINE-5'-DIPHOSPHATE (GDPg)
1h: GUANOSINE-5'-DIPHOSPHATE (GDPh)
1i: GUANOSINE-5'-DIPHOSPHATE (GDPi)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
2c: GUANOSINE-5'-TRIPHOSPHATE (GTPc)
2d: GUANOSINE-5'-TRIPHOSPHATE (GTPd)
2e: GUANOSINE-5'-TRIPHOSPHATE (GTPe)
2f: GUANOSINE-5'-TRIPHOSPHATE (GTPf)
2g: GUANOSINE-5'-TRIPHOSPHATE (GTPg)
2h: GUANOSINE-5'-TRIPHOSPHATE (GTPh)
2i: GUANOSINE-5'-TRIPHOSPHATE (GTPi)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
9
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
GTP
9
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
3
MG
9
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:11 , ALA A:99 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , ASN A:206 , TYR A:224 , ASN A:228 , MG A:502 , HOH A:601 , ASN B:249 , LYS B:254
BINDING SITE FOR RESIDUE GTP A 501
02
AC2
SOFTWARE
GTP A:501 , HOH A:601 , HOH A:602 , HOH A:603 , HOH A:604
BINDING SITE FOR RESIDUE MG A 502
03
AC3
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , ASN B:101 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , ASP B:179 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228
BINDING SITE FOR RESIDUE GDP B 901
04
AC4
SOFTWARE
GLN C:11 , ALA C:99 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , ASN C:206 , TYR C:224 , ASN C:228 , MG C:502 , HOH C:601 , ASN D:249 , LYS D:254
BINDING SITE FOR RESIDUE GTP C 501
05
AC5
SOFTWARE
GTP C:501 , HOH C:601 , HOH C:602 , HOH C:603 , HOH C:604
BINDING SITE FOR RESIDUE MG C 502
06
AC6
SOFTWARE
GLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , ASN D:101 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , ASP D:179 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228
BINDING SITE FOR RESIDUE GDP D 901
07
AC7
SOFTWARE
GLN E:11 , ALA E:99 , ASN E:101 , SER E:140 , GLY E:143 , GLY E:144 , THR E:145 , GLY E:146 , ASN E:206 , TYR E:224 , ASN E:228 , MG E:502 , HOH E:601 , ASN F:249 , LYS F:254
BINDING SITE FOR RESIDUE GTP E 501
08
AC8
SOFTWARE
GTP E:501 , HOH E:601 , HOH E:602 , HOH E:603 , HOH E:604
BINDING SITE FOR RESIDUE MG E 502
09
AC9
SOFTWARE
GLY F:10 , GLN F:11 , CYS F:12 , GLN F:15 , ASN F:101 , GLY F:143 , GLY F:144 , THR F:145 , GLY F:146 , ASP F:179 , GLU F:183 , ASN F:206 , TYR F:224 , ASN F:228
BINDING SITE FOR RESIDUE GDP F 901
10
BC1
SOFTWARE
GLN G:11 , ALA G:99 , ASN G:101 , SER G:140 , GLY G:143 , GLY G:144 , THR G:145 , GLY G:146 , ASN G:206 , TYR G:224 , ASN G:228 , MG G:502 , HOH G:601 , ASN H:249 , LYS H:254
BINDING SITE FOR RESIDUE GTP G 501
11
BC2
SOFTWARE
GTP G:501 , HOH G:601 , HOH G:602 , HOH G:603 , HOH G:604
BINDING SITE FOR RESIDUE MG G 502
12
BC3
SOFTWARE
GLY H:10 , GLN H:11 , CYS H:12 , GLN H:15 , ASN H:101 , GLY H:143 , GLY H:144 , THR H:145 , GLY H:146 , ASP H:179 , GLU H:183 , ASN H:206 , TYR H:224 , ASN H:228
BINDING SITE FOR RESIDUE GDP H 901
13
BC4
SOFTWARE
GLN I:11 , ALA I:99 , ASN I:101 , SER I:140 , GLY I:143 , GLY I:144 , THR I:145 , GLY I:146 , ASN I:206 , TYR I:224 , ASN I:228 , MG I:502 , HOH I:601 , ASN J:249 , LYS J:254
BINDING SITE FOR RESIDUE GTP I 501
14
BC5
SOFTWARE
GTP I:501 , HOH I:601 , HOH I:602 , HOH I:603 , HOH I:604
BINDING SITE FOR RESIDUE MG I 502
15
BC6
SOFTWARE
GLY J:10 , GLN J:11 , CYS J:12 , GLN J:15 , ASN J:101 , GLY J:143 , GLY J:144 , THR J:145 , GLY J:146 , ASP J:179 , GLU J:183 , ASN J:206 , TYR J:224 , ASN J:228
BINDING SITE FOR RESIDUE GDP J 901
16
BC7
SOFTWARE
GLN K:11 , ALA K:99 , ASN K:101 , SER K:140 , GLY K:143 , GLY K:144 , THR K:145 , GLY K:146 , ASN K:206 , TYR K:224 , ASN K:228 , MG K:502 , HOH K:601 , ASN L:249 , LYS L:254
BINDING SITE FOR RESIDUE GTP K 501
17
BC8
SOFTWARE
GTP K:501 , HOH K:601 , HOH K:602 , HOH K:603 , HOH K:604
BINDING SITE FOR RESIDUE MG K 502
18
BC9
SOFTWARE
GLY L:10 , GLN L:11 , CYS L:12 , GLN L:15 , ASN L:101 , GLY L:143 , GLY L:144 , THR L:145 , GLY L:146 , ASP L:179 , GLU L:183 , ASN L:206 , TYR L:224 , ASN L:228
BINDING SITE FOR RESIDUE GDP L 901
19
CC1
SOFTWARE
GLN M:11 , ALA M:99 , ASN M:101 , SER M:140 , GLY M:143 , GLY M:144 , THR M:145 , GLY M:146 , ASN M:206 , TYR M:224 , ASN M:228 , MG M:502 , HOH M:601 , ASN N:249 , LYS N:254
BINDING SITE FOR RESIDUE GTP M 501
20
CC2
SOFTWARE
GTP M:501 , HOH M:601 , HOH M:602 , HOH M:603 , HOH M:604
BINDING SITE FOR RESIDUE MG M 502
21
CC3
SOFTWARE
LEU C:248 , GLY N:10 , GLN N:11 , CYS N:12 , GLN N:15 , ASN N:101 , GLY N:143 , GLY N:144 , THR N:145 , GLY N:146 , ASP N:179 , GLU N:183 , ASN N:206 , TYR N:224 , ASN N:228
BINDING SITE FOR RESIDUE GDP N 901
22
CC4
SOFTWARE
GLN O:11 , ALA O:99 , ASN O:101 , SER O:140 , GLY O:143 , GLY O:144 , THR O:145 , GLY O:146 , ASN O:206 , TYR O:224 , ASN O:228 , MG O:502 , HOH O:601 , ASN P:249 , LYS P:254
BINDING SITE FOR RESIDUE GTP O 501
23
CC5
SOFTWARE
GTP O:501 , HOH O:601 , HOH O:602 , HOH O:603 , HOH O:604
BINDING SITE FOR RESIDUE MG O 502
24
CC6
SOFTWARE
LEU A:248 , GLY P:10 , GLN P:11 , CYS P:12 , GLN P:15 , ASN P:101 , GLY P:143 , GLY P:144 , THR P:145 , GLY P:146 , ASP P:179 , GLU P:183 , ASN P:206 , TYR P:224 , ASN P:228
BINDING SITE FOR RESIDUE GDP P 901
25
CC7
SOFTWARE
GLN Q:11 , ALA Q:99 , ASN Q:101 , SER Q:140 , GLY Q:143 , GLY Q:144 , THR Q:145 , GLY Q:146 , ASN Q:206 , TYR Q:224 , ASN Q:228 , MG Q:502 , HOH Q:601 , ASN R:249 , LYS R:254
BINDING SITE FOR RESIDUE GTP Q 501
26
CC8
SOFTWARE
GTP Q:501 , HOH Q:601 , HOH Q:602 , HOH Q:603 , HOH Q:604
BINDING SITE FOR RESIDUE MG Q 502
27
CC9
SOFTWARE
LEU E:248 , GLY R:10 , GLN R:11 , CYS R:12 , GLN R:15 , ASN R:101 , GLY R:143 , GLY R:144 , THR R:145 , GLY R:146 , ASP R:179 , GLU R:183 , ASN R:206 , TYR R:224 , ASN R:228
BINDING SITE FOR RESIDUE GDP R 901
[
close Site info
]
SAPs(SNPs)/Variants
(6, 54)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_TBB_PIG_001 (H37V, chain B/D/F/H/J/L/N/P/R, )
2: VAR_TBB_PIG_002 (N50S, chain B/D/F/H/J/L/N/P/R, )
3: VAR_TBA1A_PIG_001 (G265G, chain A/C/E/G/I/K/M/O/Q, )
4: VAR_TBA1A_PIG_002 (G265I, chain A/C/E/G/I/K/M/O/Q, )
5: VAR_TBA1A_PIG_003 (H266I, chain A/C/E/G/I/K/M/O/Q, )
6: VAR_TBB_PIG_003 (S277A, chain B/D/F/H/J/L/N/P/R, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TBB_PIG_001
*
H
37
V
TBB_PIG
---
---
B/D/F/H/J/L/N/P/R
H
37
V
2
UniProt
VAR_TBB_PIG_002
*
N
48
S
TBB_PIG
---
---
B/D/F/H/J/L/N/P/R
N
50
S
3
UniProt
VAR_TBA1A_PIG_001
*
A
265
G
TBA1A_PIG
---
---
A/C/E/G/I/K/M/O/Q
G
265
G
4
UniProt
VAR_TBA1A_PIG_002
*
A
265
I
TBA1A_PIG
---
---
A/C/E/G/I/K/M/O/Q
G
265
I
5
UniProt
VAR_TBA1A_PIG_003
*
H
266
I
TBA1A_PIG
---
---
A/C/E/G/I/K/M/O/Q
H
266
I
6
UniProt
VAR_TBB_PIG_003
*
S
275
A
TBB_PIG
---
---
B/D/F/H/J/L/N/P/R
S
277
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 18)
Info
All PROSITE Patterns/Profiles
1: TUBULIN (B:142-148,D:142-148,F:142-148,H:14...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TUBULIN
PS00227
Tubulin subunits alpha, beta, and gamma signature.
TBB_PIG
140-146
9
B:142-148
D:142-148
F:142-148
H:142-148
J:142-148
L:142-148
N:142-148
P:142-148
R:142-148
TBA1A_PIG
142-148
9
A:142-148
C:142-148
E:142-148
G:142-148
I:142-148
K:142-148
M:142-148
O:142-148
Q:142-148
[
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Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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