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3J5R
Asym. Unit
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Asym.Unit (329 KB)
Biol.Unit 1 (321 KB)
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(1)
Title
:
RECONSTRUCTION OF TRPV1 ION CHANNEL IN COMPLEX WITH CAPSAICIN BY SINGLE PARTICLE CRYO-MICROSCOPY
Authors
:
M. Liao, E. Cao, D. Julius, Y. Cheng
Date
:
28 Oct 13 (Deposition) - 04 Dec 13 (Release) - 18 Dec 13 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
4.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Trpv1 Channel, Capsaicin, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Cao, M. Liao, Y. Cheng, D. Julius
Trpv1 Structures In Distinct Conformations Reveal Activatio Mechanisms.
Nature V. 504 113 2013
[
close entry info
]
Hetero Components
(1, 44)
Info
All Hetero Components
1a: (UNKa)
1aa: (UNKaa)
1ab: (UNKab)
1ac: (UNKac)
1ad: (UNKad)
1ae: (UNKae)
1af: (UNKaf)
1ag: (UNKag)
1ah: (UNKah)
1ai: (UNKai)
1aj: (UNKaj)
1ak: (UNKak)
1al: (UNKal)
1am: (UNKam)
1an: (UNKan)
1ao: (UNKao)
1ap: (UNKap)
1aq: (UNKaq)
1ar: (UNKar)
1b: (UNKb)
1c: (UNKc)
1d: (UNKd)
1e: (UNKe)
1f: (UNKf)
1g: (UNKg)
1h: (UNKh)
1i: (UNKi)
1j: (UNKj)
1k: (UNKk)
1l: (UNKl)
1m: (UNKm)
1n: (UNKn)
1o: (UNKo)
1p: (UNKp)
1q: (UNKq)
1r: (UNKr)
1s: (UNKs)
1t: (UNKt)
1u: (UNKu)
1v: (UNKv)
1w: (UNKw)
1x: (UNKx)
1y: (UNKy)
1z: (UNKz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
UNK
44
Mod. Amino Acid
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ANK_REP_REGION (A:200-355,B:200-355,C:200-355,D:20...)
2: ANK_REPEAT (A:200-232,B:200-232,C:200-232,D:20...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANK_REP_REGION
PS50297
Ankyrin repeat region circular profile.
TRPV1_RAT
200-355
4
A:200-355
B:200-355
C:200-355
D:200-355
2
ANK_REPEAT
PS50088
Ankyrin repeat profile.
TRPV1_RAT
200-232
4
A:200-232
B:200-232
C:200-232
D:200-232
[
close PROSITE info
]
Exons
(12, 48)
Info
All Exons
Exon 1.3 (A:111-150 | B:111-150 | C:111-150 ...)
Exon 1.4 (A:150-201 | B:150-201 | C:150-201 ...)
Exon 1.5 (A:201-248 | B:201-248 | C:201-248 ...)
Exon 1.6 (A:248-347 | B:248-347 | C:248-347 ...)
Exon 1.7 (A:348-407 | B:348-407 | C:348-407 ...)
Exon 1.8 (A:408-460 | B:408-460 | C:408-460 ...)
Exon 1.9 (A:461-492 | B:461-492 | C:461-492 ...)
Exon 1.10 (A:493-516 (gaps) | B:493-516 (gaps...)
Exon 1.11 (A:516-571 | B:516-571 | C:516-571 ...)
Exon 1.12 (A:572-594 | B:572-594 | C:572-594 ...)
Exon 1.13 (A:594-700 (gaps) | B:594-700 (gaps...)
Exon 1.14 (A:701-762 (gaps) | B:701-762 (gaps...)
View:
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All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13
12: Boundary 1.13/1.14
13: Boundary 1.14/1.15
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000026493
1
ENSRNOE00000189884
chr10:
60109656-60109702
47
TRPV1_RAT
-
0
0
-
-
1.2
ENSRNOT00000026493
2
ENSRNOE00000189906
chr10:
60113571-60113887
317
TRPV1_RAT
1-95
95
0
-
-
1.3
ENSRNOT00000026493
3
ENSRNOE00000189206
chr10:
60114528-60114691
164
TRPV1_RAT
95-150
56
4
A:111-150
B:111-150
C:111-150
D:111-150
40
40
40
40
1.4
ENSRNOT00000026493
4
ENSRNOE00000189276
chr10:
60114768-60114920
153
TRPV1_RAT
150-201
52
4
A:150-201
B:150-201
C:150-201
D:150-201
52
52
52
52
1.5
ENSRNOT00000026493
5
ENSRNOE00000189333
chr10:
60115485-60115625
141
TRPV1_RAT
201-248
48
4
A:201-248
B:201-248
C:201-248
D:201-248
48
48
48
48
1.6
ENSRNOT00000026493
6
ENSRNOE00000189392
chr10:
60115727-60116025
299
TRPV1_RAT
248-347
100
4
A:248-347
B:248-347
C:248-347
D:248-347
100
100
100
100
1.7
ENSRNOT00000026493
7
ENSRNOE00000189985
chr10:
60116724-60116903
180
TRPV1_RAT
348-407
60
4
A:348-407
B:348-407
C:348-407
D:348-407
60
60
60
60
1.8
ENSRNOT00000026493
8
ENSRNOE00000189447
chr10:
60119344-60119502
159
TRPV1_RAT
408-460
53
4
A:408-460
B:408-460
C:408-460
D:408-460
53
53
53
53
1.9
ENSRNOT00000026493
9
ENSRNOE00000189477
chr10:
60121031-60121126
96
TRPV1_RAT
461-492
32
4
A:461-492
B:461-492
C:461-492
D:461-492
32
32
32
32
1.10
ENSRNOT00000026493
10
ENSRNOE00000268470
chr10:
60123512-60123582
71
TRPV1_RAT
493-516
24
4
A:493-516 (gaps)
B:493-516 (gaps)
C:493-516 (gaps)
D:493-516 (gaps)
24
24
24
24
1.11
ENSRNOT00000026493
11
ENSRNOE00000268462
chr10:
60125844-60126009
166
TRPV1_RAT
516-571
56
4
A:516-571
B:516-571
C:516-571
D:516-571
56
56
56
56
1.12
ENSRNOT00000026493
12
ENSRNOE00000268452
chr10:
60126415-60126481
67
TRPV1_RAT
572-594
23
4
A:572-594
B:572-594
C:572-594
D:572-594
23
23
23
23
1.13
ENSRNOT00000026493
13
ENSRNOE00000268443
chr10:
60127940-60128259
320
TRPV1_RAT
594-700
107
4
A:594-700 (gaps)
B:594-700 (gaps)
C:594-700 (gaps)
D:594-700 (gaps)
107
107
107
107
1.14
ENSRNOT00000026493
14
ENSRNOE00000268434
chr10:
60129169-60129296
128
TRPV1_RAT
701-743
43
4
A:701-762 (gaps)
B:701-762 (gaps)
C:701-762 (gaps)
D:701-762 (gaps)
31
31
31
31
1.15
ENSRNOT00000026493
15
ENSRNOE00000268427
chr10:
60129747-60129862
116
TRPV1_RAT
743-782
40
0
-
-
1.16
ENSRNOT00000026493
16
ENSRNOE00000190023
chr10:
60134517-60134939
423
TRPV1_RAT
782-838
57
0
-
-
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