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Asym. Unit
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Asym.Unit (257 KB)
Biol.Unit 1 (248 KB)
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(1)
Title
:
HUMAN NDC80 BONSAI DECORATED MICROTUBULE
Authors
:
G. M. Alushin, V. H. Ramey, S. Pasqualato, D. A. Ball, N. Grigorieff, A. M E. Nogales
Date
:
09 Aug 10 (Deposition) - 13 Oct 10 (Release) - 19 Jun 13 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
8.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Ndc80, Hec1, Nuf2, Tubulin, Kinetochore, Mitosis, Calponin Homology Domain, Microtubule, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. M. Alushin, V. H. Ramey, S. Pasqualato, D. A. Ball, N. Grigorieff, A. Musacchio, E. Nogales
The Ndc80 Kinetochore Complex Forms Oligomeric Arrays Along Microtubules.
Nature V. 467 805 2010
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Hetero Components
(5, 5)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
3a: MAGNESIUM ION (MGa)
4a: TAXOL (TA1a)
5a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
GTP
1
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
TA1
1
Ligand/Ion
TAXOL
5
ZN
1
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:283
BINDING SITE FOR RESIDUE ZN A 900
2
AC2
SOFTWARE
GLN A:11 , GLU A:71 , GTP A:920
BINDING SITE FOR RESIDUE MG A 910
3
AC3
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ALA A:99 , ALA A:100 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , ILE A:171 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , MG A:910 , LEU B:248 , LYS B:254
BINDING SITE FOR RESIDUE GTP A 920
4
AC4
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:142 , GLY B:144 , THR B:145 , GLY B:146 , ASP B:179 , ASN B:206 , TYR B:224 , ASN B:228
BINDING SITE FOR RESIDUE GDP B 800
5
AC5
SOFTWARE
VAL B:23 , ASP B:26 , GLU B:27 , HIS B:229 , LEU B:230 , ALA B:233 , SER B:236 , PHE B:272 , PRO B:274 , LEU B:275 , THR B:276 , ARG B:278 , PRO B:360 , ARG B:369 , GLY B:370
BINDING SITE FOR RESIDUE TA1 B 820
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: TUBULIN (B:142-148,A:142-148,A:142-148)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TUBULIN
PS00227
Tubulin subunits alpha, beta, and gamma signature.
TBB2B_BOVIN
140-146
1
B:142-148
TBA1B_BOVIN
142-148
1
A:142-148
TBA1D_BOVIN
142-148
1
A:142-148
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Exons
(4, 4)
Info
All Exons
Exon 1.1 (B:2-19)
Exon 1.2 (B:20-58 (gaps))
Exon 1.3 (B:58-95)
Exon 1.4 (B:95-437 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000005346
1
ENSBTAE00000067590
chr23:
51448815-51448966
152
TBB2B_BOVIN
1-19
19
1
B:2-19
18
1.2
ENSBTAT00000005346
2
ENSBTAE00000380542
chr23:
51449714-51449822
109
TBB2B_BOVIN
20-56
37
1
B:20-58 (gaps)
39
1.3
ENSBTAT00000005346
3
ENSBTAE00000419208
chr23:
51450093-51450203
111
TBB2B_BOVIN
56-93
38
1
B:58-95
38
1.4
ENSBTAT00000005346
4
ENSBTAE00000067601
chr23:
51450543-51451603
1061
TBB2B_BOVIN
93-445
353
1
B:95-437 (gaps)
343
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SCOP Domains
(0, 0)
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CATH Domains
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all CATH domains
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Pfam Domains
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all PFAM domains
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Chain E
Chain F
Asymmetric Unit 1
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Asym.Unit (257 KB)
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