PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3IYV
Asym. Unit
Info
Asym.Unit (290 KB)
Biol.Unit 1, α-C (3.3 MB)
Biol.Unit 1 (3.3 MB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CLATHRIN D6 COAT AS FULL-LENGTH TRISKELIONS
Authors
:
G. T. Johnson, A. Fotin, Y. Cheng, P. Sliz, N. Grigorieff, S. C. Harrison T. Kirchhausen, T. Walz
Date
:
17 Jun 10 (Deposition) - 21 Jul 10 (Release) - 28 Jul 10 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
7.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R (12x)
Keywords
:
Clathrin, Alpha-Zig-Zag, Beta-Propeller, Endocytosis-Exocytosis Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Fotin, Y. Cheng, P. Sliz, N. Grigorieff, S. C. Harrison, T. Kirchhausen, T. Walz
Molecular Model For A Complete Clathrin Lattice From Electron Cryomicroscopy.
Nature V. 432 573 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 63)
Info
All PROSITE Patterns/Profiles
1: CHCR (A:537-683,B:537-683,C:537-683,D:53...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHCR
PS50236
Clathrin heavy-chain (CHCR) repeat profile.
CLH1_BOVIN
537-683
686-828
833-972
979-1124
1128-1269
1274-1420
1423-1566
63
A:537-683
B:537-683
C:537-683
D:537-683
E:537-683
F:537-683
G:537-683
H:537-683
I:537-683
A:686-828
B:686-828
C:686-828
D:686-828
E:686-828
F:686-828
G:686-828
H:686-828
I:686-828
A:833-972
B:833-972
C:833-972
D:833-972
E:833-972
F:833-972
G:833-972
H:833-972
I:833-972
A:979-1124
B:979-1124
C:979-1124
D:979-1124
E:979-1124
F:979-1124
G:979-1124
H:979-1124
I:979-1124
A:1128-1269
B:1128-1269
C:1128-1269
D:1128-1269
E:1128-1269
F:1128-1269
G:1128-1269
H:1128-1269
I:1128-1269
A:1274-1420
B:1274-1420
C:1274-1420
D:1274-1420
E:1274-1420
F:1274-1420
G:1274-1420
H:1274-1420
I:1274-1420
A:1423-1566
B:1423-1566
C:1423-1566
D:1423-1566
E:1423-1566
F:1423-1566
G:1423-1566
H:1423-1566
I:1423-1566
[
close PROSITE info
]
Exons
(3, 27)
Info
All Exons
Exon 1.3 (J:95-120 | K:95-120 | L:95-120 | M...)
Exon 1.4 (J:120-157 | K:120-157 | L:120-157 ...)
Exon 1.5 (J:157-164 | K:157-164 | L:157-164 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENSBTAT00000001518
1b
ENSBTAE00000414641
chr8:
63234571-63234874
304
CLCA_BOVIN
1-68
68
0
-
-
1.2
ENSBTAT00000001518
2
ENSBTAE00000012115
chr8:
63239743-63239780
38
CLCA_BOVIN
68-80
13
0
-
-
1.3
ENSBTAT00000001518
3
ENSBTAE00000012120
chr8:
63242090-63242207
118
CLCA_BOVIN
81-120
40
9
J:95-120
K:95-120
L:95-120
M:95-120
N:95-120
O:95-120
P:95-120
Q:95-120
R:95-120
26
26
26
26
26
26
26
26
26
1.4
ENSBTAT00000001518
4
ENSBTAE00000012126
chr8:
63246562-63246673
112
CLCA_BOVIN
120-157
38
9
J:120-157
K:120-157
L:120-157
M:120-157
N:120-157
O:120-157
P:120-157
Q:120-157
R:120-157
38
38
38
38
38
38
38
38
38
1.5
ENSBTAT00000001518
5
ENSBTAE00000012139
chr8:
63249662-63249715
54
CLCA_BOVIN
157-175
19
9
J:157-164
K:157-164
L:157-164
M:157-164
N:157-164
O:157-164
P:157-164
Q:157-164
R:157-164
8
8
8
8
8
8
8
8
8
1.6
ENSBTAT00000001518
6
ENSBTAE00000012140
chr8:
63250877-63250913
37
CLCA_BOVIN
175-187
13
0
-
-
1.7c
ENSBTAT00000001518
7c
ENSBTAE00000405694
chr8:
63251863-63252309
447
CLCA_BOVIN
188-243
56
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
Chain O
Chain P
Chain Q
Chain R
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (290 KB)
Header - Asym.Unit
Biol.Unit 1 (3.3 MB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3IYV
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help