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3IXQ
Asym. Unit
Info
Asym.Unit (170 KB)
Biol.Unit 1 (166 KB)
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(1)
Title
:
STRUCTURE OF RIBOSE 5-PHOSPHATE ISOMERASE A FROM METHANOCALDOCOCCUS JANNASCHII
Authors
:
S. V. Antonyuk, M. J. Ellis, R. W. Strange, S. S. Hasnain, Y. Bessho, S. Kuramitsu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
04 Sep 09 (Deposition) - 06 Oct 09 (Release) - 09 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.78
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Structural Genomics, Isomerase, Pentose Phosphate Pathway, Carbon Fixation, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Carbohydrate Metabolism
(Keyword Search:
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Reference
:
R. W. Strange, S. V. Antonyuk, M. J. Ellis, Y. Bessho, S. Kuramitsu, S. Yokoyama, S. S. Hasnain
The Structure Of An Archaeal Ribose-5-Phosphate Isomerase From Methanocaldococcus Jannaschii (Mj1603).
Acta Crystallogr. , Sect. F V. 65 1214 2009
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: S-1,2-PROPANEDIOL (PGOa)
3b: S-1,2-PROPANEDIOL (PGOb)
3c: S-1,2-PROPANEDIOL (PGOc)
3d: S-1,2-PROPANEDIOL (PGOd)
3e: S-1,2-PROPANEDIOL (PGOe)
3f: S-1,2-PROPANEDIOL (PGOf)
3g: S-1,2-PROPANEDIOL (PGOg)
3h: S-1,2-PROPANEDIOL (PGOh)
3i: S-1,2-PROPANEDIOL (PGOi)
3j: S-1,2-PROPANEDIOL (PGOj)
3k: S-1,2-PROPANEDIOL (PGOk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CL
4
Ligand/Ion
CHLORIDE ION
3
PGO
11
Ligand/Ion
S-1,2-PROPANEDIOL
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:98 , GLY A:100 , GLY A:101 , CYS A:102 , GLU A:106 , PGO A:233
BINDING SITE FOR RESIDUE CL A 231
02
AC2
SOFTWARE
ARG A:37 , TYR A:66 , HOH A:249
BINDING SITE FOR RESIDUE PGO A 234
03
AC3
SOFTWARE
GLY A:29 , SER A:30 , THR A:31 , LYS A:124 , PGO A:233 , HOH A:243 , HOH A:290 , HOH A:340
BINDING SITE FOR RESIDUE PGO A 232
04
AC4
SOFTWARE
THR A:28 , ASP A:83 , GLY A:84 , ALA A:85 , ASP A:86 , LYS A:97 , GLY A:98 , GLU A:106 , CL A:231 , PGO A:232 , HOH A:371
BINDING SITE FOR RESIDUE PGO A 233
05
AC5
SOFTWARE
GLY B:98 , GLY B:100 , GLY B:101 , CYS B:102 , GLU B:106 , PGO B:233
BINDING SITE FOR RESIDUE CL B 231
06
AC6
SOFTWARE
ALA B:85 , ASP B:86 , LYS B:97 , GLY B:98 , GLY B:99 , GLY B:100 , GLU B:106 , CL B:231 , PGO B:235 , HOH B:491 , HOH B:577 , HOH B:578
BINDING SITE FOR RESIDUE PGO B 233
07
AC7
SOFTWARE
LEU B:70 , VAL B:71 , HOH B:450 , HOH B:470 , HOH B:494 , LEU D:70
BINDING SITE FOR RESIDUE PGO B 234
08
AC8
SOFTWARE
LYS B:7 , GLY B:29 , SER B:30 , THR B:31 , LYS B:124 , PGO B:233 , HOH B:356 , HOH B:577
BINDING SITE FOR RESIDUE PGO B 235
09
AC9
SOFTWARE
GLY C:98 , GLY C:100 , GLY C:101 , CYS C:102 , GLU C:106 , PGO C:233
BINDING SITE FOR RESIDUE CL C 231
10
BC1
SOFTWARE
THR C:28 , ASP C:83 , GLY C:84 , ALA C:85 , ASP C:86 , LYS C:97 , GLY C:98 , GLY C:99 , GLY C:100 , GLU C:106 , CL C:231 , PGO C:234
BINDING SITE FOR RESIDUE PGO C 233
11
BC2
SOFTWARE
GLY C:29 , SER C:30 , THR C:31 , LYS C:124 , PGO C:233 , HOH C:248 , HOH C:249 , HOH C:282 , HOH C:289
BINDING SITE FOR RESIDUE PGO C 234
12
BC3
SOFTWARE
LYS C:60 , HOH C:431
BINDING SITE FOR RESIDUE ACT C 227
13
BC4
SOFTWARE
GLY D:98 , GLY D:100 , GLY D:101 , CYS D:102 , GLU D:106 , PGO D:233
BINDING SITE FOR RESIDUE CL D 231
14
BC5
SOFTWARE
LYS D:7 , GLY D:29 , SER D:30 , THR D:31 , LYS D:124 , PGO D:233 , HOH D:256
BINDING SITE FOR RESIDUE PGO D 232
15
BC6
SOFTWARE
THR D:28 , ASP D:83 , GLY D:84 , ALA D:85 , ASP D:86 , LYS D:97 , GLY D:98 , GLU D:106 , CL D:231 , PGO D:232
BINDING SITE FOR RESIDUE PGO D 233
16
BC7
SOFTWARE
GLU C:58 , LEU D:162 , GLY D:163 , LYS D:166 , ARG D:167 , GLY D:168
BINDING SITE FOR RESIDUE PGO D 234
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3ixqA02 (A:128-205)
1b: CATH_3ixqB02 (B:128-205)
1c: CATH_3ixqC02 (C:128-205)
1d: CATH_3ixqD02 (D:128-205)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.260, no name defined]
(34)
Methanocaldococcus jannaschii. Organism_taxid: 2190. Strain: dsm2661.
(1)
1a
3ixqA02
A:128-205
1b
3ixqB02
B:128-205
1c
3ixqC02
C:128-205
1d
3ixqD02
D:128-205
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (170 KB)
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