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3IXA
Biol. Unit 2
Info
Asym.Unit (139 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (69 KB)
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(1)
Title
:
HUMAN CLASS I MHC HLA-A2(A150P) IN COMPLEX WITH THE TAX PEPTIDE
Authors
:
O. Y. Borbulevych, B. M. Baker
Date
:
03 Sep 09 (Deposition) - 12 Jan 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Tel1P, Tax, A150P Mutation, Nonapeptide, Mhc Class I, Hla-A2, Tcr A6, Cross-Reactivity, Disulfide Bond, Glycoprotein, Host-Virus Interaction, Immune Response, Membrane, Mhc I, Phosphoprotein, Transmembrane, Disease Mutation, Glycation, Immunoglobulin Domain, Pyrrolidone Carboxylic Acid, Secreted, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Y. Borbulevych, K. H. Piepenbrink, B. E. Gloor, D. R. Scott, R. F. Sommese, D. K. Cole, A. K. Sewell, B. M. Baker
T Cell Receptor Cross-Reactivity Directed By Antigen-Dependent Tuning Of Peptide-Mhc Molecular Flexibility.
Immunity V. 31 885 2009
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
[
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Sites
(3, 3)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ARG D:6 , PHE D:8 , TYR D:27 , ASP D:29 , ASP D:30 , HOH D:299 , PHE E:56 , TYR E:63
BINDING SITE FOR RESIDUE GOL D 276
2
AC3
SOFTWARE
LEU D:206 , ARG D:234 , GLN D:242 , HOH D:317 , HOH D:320 , TYR E:10 , SER E:11 , ARG E:97 , GOL E:100
BINDING SITE FOR RESIDUE GOL D 277
3
AC4
SOFTWARE
TRP D:204 , ARG D:234 , TRP D:244 , GOL D:277 , HOH D:317 , TYR E:10 , SER E:11 , TRP E:95 , ASP E:96 , ARG E:97 , MET E:99
BINDING SITE FOR RESIDUE GOL E 100
[
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SAPs(SNPs)/Variants
(22, 22)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_004334 (F9Y, chain D, )
02: VAR_004335 (D30N, chain D, )
03: VAR_016726 (A41G, chain D, )
04: VAR_004336 (Q43R, chain D, )
05: VAR_004337 (K66N, chain D, )
06: VAR_016727 (H70Q, chain D, )
07: VAR_004338 (T73I, chain D, )
08: VAR_016728 (H74D, chain D, )
09: VAR_004339 (V95L, chain D, )
10: VAR_004340 (R97M, chain D, )
11: VAR_004341 (Y99C, chain D, )
12: VAR_004342 (Y99F, chain D, )
13: VAR_004343 (W107G, chain D, )
14: VAR_004344 (M138K, chain D, )
15: VAR_004345 (A149T, chain D, )
16: VAR_004346 (V152E, chain D, )
17: VAR_004348 (L156Q, chain D, )
18: VAR_004347 (L156W, chain D, )
19: VAR_004349 (T163E, chain D, )
20: VAR_016729 (E166D, chain D, )
21: VAR_016730 (W167G, chain D, )
22: VAR_004350 (A236E, chain D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_004334
F
33
Y
1A02_HUMAN
Polymorphism
---
D
F
9
Y
02
UniProt
VAR_004335
D
54
N
1A02_HUMAN
Polymorphism
---
D
D
30
N
03
UniProt
VAR_016726
A
65
G
1A02_HUMAN
Polymorphism
---
D
A
41
G
04
UniProt
VAR_004336
Q
67
R
1A02_HUMAN
Polymorphism
---
D
Q
43
R
05
UniProt
VAR_004337
K
90
N
1A02_HUMAN
Polymorphism
---
D
K
66
N
06
UniProt
VAR_016727
H
94
Q
1A02_HUMAN
Polymorphism
---
D
H
70
Q
07
UniProt
VAR_004338
T
97
I
1A02_HUMAN
Polymorphism
---
D
T
73
I
08
UniProt
VAR_016728
H
98
D
1A02_HUMAN
Polymorphism
---
D
H
74
D
09
UniProt
VAR_004339
V
119
L
1A02_HUMAN
Polymorphism
---
D
V
95
L
10
UniProt
VAR_004340
R
121
M
1A02_HUMAN
Polymorphism
---
D
R
97
M
11
UniProt
VAR_004341
Y
123
C
1A02_HUMAN
Polymorphism
---
D
Y
99
C
12
UniProt
VAR_004342
Y
123
F
1A02_HUMAN
Polymorphism
---
D
Y
99
F
13
UniProt
VAR_004343
W
131
G
1A02_HUMAN
Polymorphism
---
D
W
107
G
14
UniProt
VAR_004344
M
162
K
1A02_HUMAN
Polymorphism
---
D
M
138
K
15
UniProt
VAR_004345
A
173
T
1A02_HUMAN
Polymorphism
---
D
A
149
T
16
UniProt
VAR_004346
V
176
E
1A02_HUMAN
Polymorphism
---
D
V
152
E
17
UniProt
VAR_004348
L
180
Q
1A02_HUMAN
Polymorphism
---
D
L
156
Q
18
UniProt
VAR_004347
L
180
W
1A02_HUMAN
Polymorphism
---
D
L
156
W
19
UniProt
VAR_004349
T
187
E
1A02_HUMAN
Polymorphism
---
D
T
163
E
20
UniProt
VAR_016729
E
190
D
1A02_HUMAN
Polymorphism
---
D
E
166
D
21
UniProt
VAR_016730
W
191
G
1A02_HUMAN
Polymorphism
---
D
W
167
G
22
UniProt
VAR_004350
A
260
E
1A02_HUMAN
Polymorphism
---
D
A
236
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (E:78-84)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
1
-
E:78-84
1A02_HUMAN
281-287
1
-
D:257-263
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ixab_ (B:)
1b: SCOP_d3ixae_ (E:)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d3ixab_
B:
1b
d3ixae_
E:
[
close SCOP info
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_3ixaA01 (A:1-182)
1b: CATH_3ixaD01 (D:1-182)
2a: CATH_3ixaB00 (B:0-99)
2b: CATH_3ixaA02 (A:183-270)
2c: CATH_3ixaD02 (D:183-270)
2d: CATH_3ixaE00 (E:0-99)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
3ixaA01
A:1-182
1b
3ixaD01
D:1-182
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
3ixaB00
B:0-99
2b
3ixaA02
A:183-270
2c
3ixaD02
D:183-270
2d
3ixaE00
E:0-99
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Atom Selection
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all
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain D
Chain E
Chain F
Asymmetric Unit 1
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