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3IWN
Asym. Unit
Info
Asym.Unit (115 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (56 KB)
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(1)
Title
:
CO-CRYSTAL STRUCTURE OF A BACTERIAL C-DI-GMP RIBOSWITCH
Authors
:
N. Kulshina, N. J. Baird, A. R. Ferre-D'Amare
Date
:
02 Sep 09 (Deposition) - 10 Nov 09 (Release) - 22 Dec 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Riboswitch, Rna, U1A, Rna/Rna Binding Protein Complex, Acetylation, Mrna Processing, Mrna Splicing, Nucleus, Phosphoprotein, Ribonucleoprotein, Rna-Binding, Spliceosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Kulshina, N. J. Baird, A. R. Ferre-D'Amare
Recognition Of The Bacterial Second Messenger Cyclic Diguanylate By Its Cognate Riboswitch.
Nat. Struct. Mol. Biol. V. 16 1212 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10A... (C2Ea)
1b: 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10A... (C2Eb)
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No.
Name
Count
Type
Full Name
1
C2E
2
Ligand/Ion
9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10,12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3,2-D:3',2'-J][1,3,7,9,2,8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO-1,9-DIHYDRO-6H-PURIN-6-ONE)
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
G A:4 , C A:5 , A A:8 , G A:9 , G A:10 , G A:11 , C A:36 , A A:37 , A A:38 , A A:39 , G A:40 , C A:87 , C A:88
BINDING SITE FOR RESIDUE C2E A 501
2
AC2
SOFTWARE
G B:104 , C B:105 , C B:107 , A B:108 , G B:109 , G B:110 , G B:111 , C B:136 , A B:137 , A B:138 , C B:187 , C B:188
BINDING SITE FOR RESIDUE C2E B 601
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RRM (C:805-884,D:905-984|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
SNRPA_HUMAN
10-89
208-282
2
C:805-884
D:905-984
-
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Exons
(3, 6)
Info
All Exons
Exon 1.1 (C:801-820 | D:901-920)
Exon 1.2 (C:820-877 | D:920-977)
Exon 1.3 (C:878-891 | D:978-991)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000243563
1
ENSE00001052136
chr19:
41256779-41257386
608
SNRPA_HUMAN
1-25
25
2
C:801-820
D:901-920
20
20
1.2
ENST00000243563
2
ENSE00000707951
chr19:
41263237-41263409
173
SNRPA_HUMAN
25-82
58
2
C:820-877
D:920-977
58
58
1.3
ENST00000243563
3
ENSE00000707956
chr19:
41265336-41265515
180
SNRPA_HUMAN
83-142
60
2
C:878-891
D:978-991
14
14
1.4
ENST00000243563
4
ENSE00000707961
chr19:
41268806-41268979
174
SNRPA_HUMAN
143-200
58
0
-
-
1.5
ENST00000243563
5
ENSE00000842333
chr19:
41269492-41269580
89
SNRPA_HUMAN
201-230
30
0
-
-
1.6
ENST00000243563
6
ENSE00000842334
chr19:
41270913-41271290
378
SNRPA_HUMAN
230-282
53
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3iwnC00 (C:801-891)
1b: CATH_3iwnD00 (D:901-991)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
[unclassified]
(45)
1a
3iwnC00
C:801-891
1b
3iwnD00
D:901-991
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (115 KB)
Header - Asym.Unit
Biol.Unit 1 (56 KB)
Header - Biol.Unit 1
Biol.Unit 2 (56 KB)
Header - Biol.Unit 2
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