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3IV1
Asym. Unit
Info
Asym.Unit (220 KB)
Biol.Unit 1 (109 KB)
Biol.Unit 2 (109 KB)
Biol.Unit 3 (108 KB)
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(1)
Title
:
COILED-COIL DOMAIN OF TUMOR SUSCEPTIBILITY GENE 101
Authors
:
D. Neculai, G. V. Avvakumov, A. K. Wernimont, S. Xue, J. R. Walker, Y. Li, J. Weigelt, C. Bountra, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Paganon, Structural Genomics Consortium (Sgc)
Date
:
31 Aug 09 (Deposition) - 03 Nov 09 (Release) - 03 Nov 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F (2x)
Biol. Unit 3: G,H (2x)
Keywords
:
Coiled_coil, Tumorigenesis, Cell_cycle Regulation, Alternative Splicing, Cell Cycle, Cell Division, Coiled Coil, Cytoplasm, Endosome, Growth Regulation, Host-Virus Interaction, Membrane, Nucleus, Phosphoprotein, Polymorphism, Protein Transport, Transport, Ubl Conjugation, Hydrolase, Structural Genomics, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Neculai, G. V. Avvakumov, A. K. Wernimont, S. Xue, J. R. Walker, Y. Li, J. Weigelt, C. Bountra, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Paganon
Coiled-Coil Domain Of Human Tsg101
To Be Published
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(3, 36)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
3a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
11
Ligand/Ion
CHLORIDE ION
2
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:237 , TRP E:240
BINDING SITE FOR RESIDUE SO4 A 601
02
AC2
SOFTWARE
LYS A:304
BINDING SITE FOR RESIDUE CL A 602
03
AC3
SOFTWARE
SER B:300 , LYS B:304 , GLY F:227
BINDING SITE FOR RESIDUE CL B 602
04
AC4
SOFTWARE
SER B:235 , SER C:235
BINDING SITE FOR RESIDUE CL C 601
05
AC5
SOFTWARE
LYS C:304
BINDING SITE FOR RESIDUE CL C 305
06
AC6
SOFTWARE
SER D:235
BINDING SITE FOR RESIDUE CL D 601
07
AC7
SOFTWARE
GLY H:227
BINDING SITE FOR RESIDUE CL D 602
08
AC8
SOFTWARE
SER E:235 , SER F:235 , ARG F:239
BINDING SITE FOR RESIDUE CL E 601
09
AC9
SOFTWARE
GLY D:227 , SER E:300 , LYS E:304
BINDING SITE FOR RESIDUE CL E 602
10
BC1
SOFTWARE
LYS G:304
BINDING SITE FOR RESIDUE CL G 601
11
BC2
SOFTWARE
GLY E:227 , LYS H:304
BINDING SITE FOR RESIDUE CL H 601
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(2, 16)
Info
All Exons
Exon 1.8 (A:227-281 (gaps) | B:227-281 (gaps...)
Exon 1.9 (A:282-304 | B:282-304 | C:282-304 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.7b/1.8
2: Boundary 1.8/1.9
3: Boundary 1.9/1.10a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000251968
1a
ENSE00001129196
chr11:
18548489-18548322
168
TS101_HUMAN
1-14
14
0
-
-
1.2
ENST00000251968
2
ENSE00001106778
chr11:
18541150-18541066
85
TS101_HUMAN
15-43
29
0
-
-
1.3
ENST00000251968
3
ENSE00001615198
chr11:
18537711-18537646
66
TS101_HUMAN
43-65
23
0
-
-
1.4
ENST00000251968
4
ENSE00001604894
chr11:
18536388-18536225
164
TS101_HUMAN
65-119
55
0
-
-
1.5
ENST00000251968
5
ENSE00001631564
chr11:
18531212-18531089
124
TS101_HUMAN
120-161
42
0
-
-
1.6
ENST00000251968
6
ENSE00001601359
chr11:
18528470-18528404
67
TS101_HUMAN
161-183
23
0
-
-
1.7b
ENST00000251968
7b
ENSE00001106774
chr11:
18524124-18524033
92
TS101_HUMAN
183-214
32
0
-
-
1.8
ENST00000251968
8
ENSE00001106772
chr11:
18505619-18505417
203
TS101_HUMAN
214-281
68
8
A:227-281 (gaps)
B:227-281 (gaps)
C:227-281 (gaps)
D:227-281 (gaps)
E:227-281 (gaps)
F:227-281 (gaps)
G:227-281 (gaps)
H:227-281 (gaps)
68
68
68
68
68
68
68
68
1.9
ENST00000251968
9
ENSE00001106782
chr11:
18503416-18503177
240
TS101_HUMAN
282-361
80
8
A:282-304
B:282-304
C:282-304
D:282-304
E:282-304
F:282-304
G:282-304
H:282-304
23
23
23
23
23
23
23
23
1.10a
ENST00000251968
10a
ENSE00001106781
chr11:
18502182-18501862
321
TS101_HUMAN
362-390
29
0
-
-
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Atom Selection
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Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Show PDB file:
Asym.Unit (220 KB)
Header - Asym.Unit
Biol.Unit 1 (109 KB)
Header - Biol.Unit 1
Biol.Unit 2 (109 KB)
Header - Biol.Unit 2
Biol.Unit 3 (108 KB)
Header - Biol.Unit 3
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