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3IUE
Biol. Unit 2
Info
Asym.Unit (109 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (53 KB)
Biol.Unit 3 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PANTOTHENATE SYNTHETASE IN COMPLEX WITH 2-(5-METHOXY-2-(5-METHYLPYRIDIN-2-YLSULFONYLCARBAMOYL)-1H-INDOL-1-YL) ACETIC ACID
Authors
:
H. L. Silvestre, S. Wen, A. W. Hung, A. Ciulli, T. L. Blundell, C. Abell
Date
:
31 Aug 09 (Deposition) - 13 Oct 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Mycobacterium Tuberculosis, Pantothenate Synthetase, Fragment-Based Lead Discovery, Atp-Binding, Ligase, Magnesium, Metal-Binding, Nucleotide-Binding, Pantothenate Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. W. Hung, H. L. Silvestre, S. Wen, A. Ciulli, T. L. Blundell, C. Abell
Application Of Fragment Growing And Fragment Linking To The Discovery Of Inhibitors Of Mycobacterium Tuberculosis Pantothenate Synthetase.
Angew. Chem. Int. Ed. Engl. V. 48 8452 2009
[
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
2a: ETHANOL (EOHa)
2b: ETHANOL (EOHb)
2c: ETHANOL (EOHc)
2d: ETHANOL (EOHd)
2e: ETHANOL (EOHe)
2f: ETHANOL (EOHf)
3a: (5-METHOXY-2-{[(5-METHYLPYRIDIN-2-... (FG3a)
3b: (5-METHOXY-2-{[(5-METHYLPYRIDIN-2-... (FG3b)
3c: (5-METHOXY-2-{[(5-METHYLPYRIDIN-2-... (FG3c)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
2
EOH
6
Ligand/Ion
ETHANOL
3
FG3
2
Ligand/Ion
(5-METHOXY-2-{[(5-METHYLPYRIDIN-2-YL)SULFONYL]CARBAMOYL}-1H-INDOL-1-YL)ACETIC ACID
4
GOL
3
Ligand/Ion
GLYCEROL
[
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]
Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC8 (SOFTWARE)
17: CC2 (SOFTWARE)
18: CC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:38 , THR A:39 , MET A:40 , HIS A:44 , GLY A:46 , HIS A:47 , TYR A:82 , LYS A:160 , ASP A:161 , GLN A:164 , PRO A:185 , VAL A:187 , MET A:195 , SER A:196 , SER A:197 , HOH A:483 , HOH A:595 , HOH A:599 , HOH A:605 , EDO A:720
BINDING SITE FOR RESIDUE FG3 A 302
02
AC2
SOFTWARE
MET A:71 , LEU A:114 , PRO A:133 , THR A:134 , GLY A:138 , HOH A:304 , HOH A:608 , EOH A:722 , ILE B:3 , PRO B:4 , PHE B:6 , PRO B:8 , LEU B:27 , THR B:30 , ARG B:32 , GLN B:119
BINDING SITE FOR RESIDUE FG3 A 303
03
AC3
SOFTWARE
LEU A:262 , ASN A:263 , ILE A:287
BINDING SITE FOR RESIDUE GOL A 707
04
AC4
SOFTWARE
HIS A:44 , GLU A:189 , MET A:195 , SER A:196 , ASN A:199 , HOH A:409 , HOH A:520
BINDING SITE FOR RESIDUE GOL A 708
05
AC5
SOFTWARE
PRO A:17 , ALA A:21 , ARG A:25 , GLN A:148 , ASN B:176
BINDING SITE FOR RESIDUE GOL A 710
06
AC6
SOFTWARE
MET A:109 , TYR A:110 , GLY A:113 , LEU A:114 , ARG A:115 , THR A:116 , LYS A:145 , ASP B:174
BINDING SITE FOR RESIDUE EDO A 716
07
AC7
SOFTWARE
GLU A:128 , HIS A:135 , HOH A:414 , HOH A:633
BINDING SITE FOR RESIDUE EDO A 717
08
AC8
SOFTWARE
PRO A:111 , ASP A:112 , HOH A:499 , EOH A:723
BINDING SITE FOR RESIDUE EDO A 719
09
AC9
SOFTWARE
PRO A:38 , MET A:40 , GLN A:72 , VAL A:142 , FG3 A:302 , HOH A:398 , HOH A:593 , HOH A:641
BINDING SITE FOR RESIDUE EDO A 720
10
BC1
SOFTWARE
ALA A:205 , GLN A:206 , ALA A:209 , PRO A:243 , HOH A:438
BINDING SITE FOR RESIDUE EOH A 721
11
BC2
SOFTWARE
ARG A:115 , THR A:117 , FG3 A:303 , HOH A:429 , GLN B:119 , PRO B:120
BINDING SITE FOR RESIDUE EOH A 722
12
BC3
SOFTWARE
HOH A:499 , HOH A:606 , EDO A:719
BINDING SITE FOR RESIDUE EOH A 723
13
BC4
SOFTWARE
THR A:218 , HOH A:631 , HIS B:222 , THR B:225
BINDING SITE FOR RESIDUE EOH A 724
14
BC5
SOFTWARE
ASN A:176 , GLY B:18
BINDING SITE FOR RESIDUE EOH A 725
15
BC6
SOFTWARE
THR A:105 , THR A:106 , HOH A:389
BINDING SITE FOR RESIDUE EOH A 726
16
BC8
SOFTWARE
GLN A:148 , ARG A:151 , LEU B:147 , GLN B:148 , ARG B:151 , LEU B:177 , ASP B:178 , VAL B:179 , HOH B:333 , HOH B:335
BINDING SITE FOR RESIDUE GOL B 709
17
CC2
SOFTWARE
ARG A:169 , ALA A:173 , HOH A:329 , ASP B:112 , ARG B:115 , HOH B:417 , HOH B:460
BINDING SITE FOR RESIDUE GOL B 713
18
CC4
SOFTWARE
ASP A:174 , MET B:109 , TYR B:110 , GLY B:113 , LEU B:114 , ARG B:115 , THR B:116 , THR B:117 , LYS B:145
BINDING SITE FOR RESIDUE EDO B 715
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3iuea_ (A:)
1b: SCOP_d3iueb_ (B:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(46)
Protein domain
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(44)
Mycobacterium tuberculosis [TaxId: 1773]
(39)
1a
d3iuea_
A:
1b
d3iueb_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3iueB02 (B:186-288)
1b: CATH_3iueA02 (A:186-290)
2a: CATH_3iueA01 (A:3-185)
2b: CATH_3iueB01 (B:1-185)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Pantoate--beta-alanine Ligase; Chain: A,domain 2
(43)
Homologous Superfamily
:
[code=3.30.1300.10, no name defined]
(36)
Mycobacterium tuberculosis. Organism_taxid: 1773. Strain: h37rv.
(6)
1a
3iueB02
B:186-288
1b
3iueA02
A:186-290
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Mycobacterium tuberculosis. Organism_taxid: 1773. Strain: h37rv.
(6)
2a
3iueA01
A:3-185
2b
3iueB01
B:1-185
[
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Pfam Domains
(0, 0)
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Asym.Unit (109 KB)
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