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3IUE
Asym. Unit
Info
Asym.Unit (109 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (53 KB)
Biol.Unit 3 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PANTOTHENATE SYNTHETASE IN COMPLEX WITH 2-(5-METHOXY-2-(5-METHYLPYRIDIN-2-YLSULFONYLCARBAMOYL)-1H-INDOL-1-YL) ACETIC ACID
Authors
:
H. L. Silvestre, S. Wen, A. W. Hung, A. Ciulli, T. L. Blundell, C. Abell
Date
:
31 Aug 09 (Deposition) - 13 Oct 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Keywords
:
Mycobacterium Tuberculosis, Pantothenate Synthetase, Fragment-Based Lead Discovery, Atp-Binding, Ligase, Magnesium, Metal-Binding, Nucleotide-Binding, Pantothenate Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. W. Hung, H. L. Silvestre, S. Wen, A. Ciulli, T. L. Blundell, C. Abell
Application Of Fragment Growing And Fragment Linking To The Discovery Of Inhibitors Of Mycobacterium Tuberculosis Pantothenate Synthetase.
Angew. Chem. Int. Ed. Engl. V. 48 8452 2009
[
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Hetero Components
(4, 23)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
2a: ETHANOL (EOHa)
2b: ETHANOL (EOHb)
2c: ETHANOL (EOHc)
2d: ETHANOL (EOHd)
2e: ETHANOL (EOHe)
2f: ETHANOL (EOHf)
3a: (5-METHOXY-2-{[(5-METHYLPYRIDIN-2-... (FG3a)
3b: (5-METHOXY-2-{[(5-METHYLPYRIDIN-2-... (FG3b)
3c: (5-METHOXY-2-{[(5-METHYLPYRIDIN-2-... (FG3c)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
2
EOH
6
Ligand/Ion
ETHANOL
3
FG3
3
Ligand/Ion
(5-METHOXY-2-{[(5-METHYLPYRIDIN-2-YL)SULFONYL]CARBAMOYL}-1H-INDOL-1-YL)ACETIC ACID
4
GOL
7
Ligand/Ion
GLYCEROL
[
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]
Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:38 , THR A:39 , MET A:40 , HIS A:44 , GLY A:46 , HIS A:47 , TYR A:82 , LYS A:160 , ASP A:161 , GLN A:164 , PRO A:185 , VAL A:187 , MET A:195 , SER A:196 , SER A:197 , HOH A:483 , HOH A:595 , HOH A:599 , HOH A:605 , EDO A:720
BINDING SITE FOR RESIDUE FG3 A 302
02
AC2
SOFTWARE
MET A:71 , LEU A:114 , PRO A:133 , THR A:134 , GLY A:138 , HOH A:304 , HOH A:608 , EOH A:722 , ILE B:3 , PRO B:4 , PHE B:6 , PRO B:8 , LEU B:27 , THR B:30 , ARG B:32 , GLN B:119
BINDING SITE FOR RESIDUE FG3 A 303
03
AC3
SOFTWARE
LEU A:262 , ASN A:263 , ILE A:287
BINDING SITE FOR RESIDUE GOL A 707
04
AC4
SOFTWARE
HIS A:44 , GLU A:189 , MET A:195 , SER A:196 , ASN A:199 , HOH A:409 , HOH A:520
BINDING SITE FOR RESIDUE GOL A 708
05
AC5
SOFTWARE
PRO A:17 , ALA A:21 , ARG A:25 , GLN A:148 , ASN B:176
BINDING SITE FOR RESIDUE GOL A 710
06
AC6
SOFTWARE
MET A:109 , TYR A:110 , GLY A:113 , LEU A:114 , ARG A:115 , THR A:116 , LYS A:145 , ASP B:174
BINDING SITE FOR RESIDUE EDO A 716
07
AC7
SOFTWARE
GLU A:128 , HIS A:135 , HOH A:414 , HOH A:633
BINDING SITE FOR RESIDUE EDO A 717
08
AC8
SOFTWARE
PRO A:111 , ASP A:112 , HOH A:499 , EOH A:723
BINDING SITE FOR RESIDUE EDO A 719
09
AC9
SOFTWARE
PRO A:38 , MET A:40 , GLN A:72 , VAL A:142 , FG3 A:302 , HOH A:398 , HOH A:593 , HOH A:641
BINDING SITE FOR RESIDUE EDO A 720
10
BC1
SOFTWARE
ALA A:205 , GLN A:206 , ALA A:209 , PRO A:243 , HOH A:438
BINDING SITE FOR RESIDUE EOH A 721
11
BC2
SOFTWARE
ARG A:115 , THR A:117 , FG3 A:303 , HOH A:429 , GLN B:119 , PRO B:120
BINDING SITE FOR RESIDUE EOH A 722
12
BC3
SOFTWARE
HOH A:499 , HOH A:606 , EDO A:719
BINDING SITE FOR RESIDUE EOH A 723
13
BC4
SOFTWARE
THR A:218 , HOH A:631 , HIS B:222 , THR B:225
BINDING SITE FOR RESIDUE EOH A 724
14
BC5
SOFTWARE
ASN A:176 , GLY B:18
BINDING SITE FOR RESIDUE EOH A 725
15
BC6
SOFTWARE
THR A:105 , THR A:106 , HOH A:389
BINDING SITE FOR RESIDUE EOH A 726
16
BC7
SOFTWARE
PRO B:38 , THR B:39 , MET B:40 , HIS B:44 , GLY B:46 , HIS B:47 , LEU B:50 , HIS B:135 , LYS B:160 , ASP B:161 , GLN B:164 , PRO B:185 , VAL B:187 , MET B:195 , SER B:196 , SER B:197 , HOH B:453 , HOH B:596 , HOH B:601 , HOH B:635 , HOH B:644 , GOL B:712
BINDING SITE FOR RESIDUE FG3 B 302
17
BC8
SOFTWARE
GLN A:148 , ARG A:151 , LEU B:147 , GLN B:148 , ARG B:151 , LEU B:177 , ASP B:178 , VAL B:179 , HOH B:333 , HOH B:335
BINDING SITE FOR RESIDUE GOL B 709
18
BC9
SOFTWARE
TYR B:201 , LEU B:202 , GLN B:206 , LEU B:274 , THR B:276 , THR B:277 , HOH B:378 , HOH B:408
BINDING SITE FOR RESIDUE GOL B 711
19
CC1
SOFTWARE
PRO B:38 , PHE B:67 , VAL B:142 , FG3 B:302 , HOH B:327
BINDING SITE FOR RESIDUE GOL B 712
20
CC2
SOFTWARE
ARG A:169 , ALA A:173 , HOH A:329 , ASP B:112 , ARG B:115 , HOH B:417 , HOH B:460
BINDING SITE FOR RESIDUE GOL B 713
21
CC3
SOFTWARE
GLU B:10 , LEU B:11 , ARG B:94
BINDING SITE FOR RESIDUE EDO B 714
22
CC4
SOFTWARE
ASP A:174 , MET B:109 , TYR B:110 , GLY B:113 , LEU B:114 , ARG B:115 , THR B:116 , THR B:117 , LYS B:145
BINDING SITE FOR RESIDUE EDO B 715
23
CC5
SOFTWARE
ALA B:224 , THR B:225 , GLU B:286 , ILE B:287 , GLY B:288 , HOH B:376
BINDING SITE FOR RESIDUE EDO B 718
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3iuea_ (A:)
1b: SCOP_d3iueb_ (B:)
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(
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(46)
Protein domain
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(44)
Mycobacterium tuberculosis [TaxId: 1773]
(39)
1a
d3iuea_
A:
1b
d3iueb_
B:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3iueB02 (B:186-288)
1b: CATH_3iueA02 (A:186-290)
2a: CATH_3iueA01 (A:3-185)
2b: CATH_3iueB01 (B:1-185)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Pantoate--beta-alanine Ligase; Chain: A,domain 2
(43)
Homologous Superfamily
:
[code=3.30.1300.10, no name defined]
(36)
Mycobacterium tuberculosis. Organism_taxid: 1773. Strain: h37rv.
(6)
1a
3iueB02
B:186-288
1b
3iueA02
A:186-290
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Mycobacterium tuberculosis. Organism_taxid: 1773. Strain: h37rv.
(6)
2a
3iueA01
A:3-185
2b
3iueB01
B:1-185
[
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Pfam Domains
(0, 0)
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