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3IU2
Asym. Unit
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Asym.Unit (150 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN TYPE-I N-MYRISTOYLTRANSFERASE WITH BOUND MYRISTOYL-COA AND INHIBITOR DDD90096
Authors
:
W. Qiu, A. Hutchinson, A. Wernimont, Y. -H. Lin, A. Kania, M. Ravichandr I. Kozieradzki, D. Cossar, M. Schapira, C. H. Arrowsmith, C. Bountra, J. Weigelt, A. M. Edwards, P. G. Wyatt, M. A. J. Ferguson, J. A. Frearson S. Y. Brand, D. A. Robinson, A. Bochkarev, R. Hui, Structural Genomic Consortium (Sgc)
Date
:
29 Aug 09 (Deposition) - 15 Sep 09 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase, N-Myristoyltransferase, Nmt1, Acyltransferas, Acyltransferase, Phosphoprotein, Structural Genomics, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Qiu, A. Hutchinson, A. Wernimont, Y. -H. Lin, A. Kania, M. Ravichandran, I. Kozieradzki, D. Cossar, M. Schapira, C. H. Arrowsmith, C. Bountra, J. Weigelt, A. M. Edwards, P. G. Wyatt, M. A. J. Ferguson, J. A. Frearson, S. Y. Brand, D. A. Robinson, A. Bochkarev, R. Hui
Crystal Structure Of Human Type-I N-Myristoyltransferase With Bound Myristoyl-Coa And Inhibitor Ddd90096
To Be Published
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: (2R)-2-{4-HYDROXY-5-METHOXY-2-[3-(... (096a)
1b: (2R)-2-{4-HYDROXY-5-METHOXY-2-[3-(... (096b)
2a: TETRADECANOYL-COA (MYAa)
2b: TETRADECANOYL-COA (MYAb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
096
2
Ligand/Ion
(2R)-2-{4-HYDROXY-5-METHOXY-2-[3-(4-METHYLPIPERAZIN-1-YL)PROPYL]PHENYL}-3-PYRIDIN-3-YL-1,3-THIAZOLIDIN-4-ONE
2
MYA
2
Ligand/Ion
TETRADECANOYL-COA
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:79 , HOH A:84 , TYR A:117 , GLN A:118 , PHE A:119 , TRP A:120 , ASN A:179 , TYR A:180 , VAL A:181 , PHE A:247 , LEU A:248 , CYS A:249 , VAL A:250 , ARG A:255 , SER A:256 , LYS A:257 , ARG A:258 , VAL A:259 , ALA A:260 , PRO A:261 , THR A:268 , VAL A:271 , PHE A:277 , TYR A:281 , THR A:282 , LEU A:287 , TYR A:479 , HOH A:554 , HOH A:587 , HOH A:588 , HOH A:611 , HOH A:636 , HOH A:637 , HOH A:673 , HOH A:698
BINDING SITE FOR RESIDUE MYA A 1001
2
AC2
SOFTWARE
VAL A:181 , GLU A:182 , ASP A:183 , ASP A:184 , PHE A:188 , ARG A:189 , PHE A:190 , GLY A:284 , TYR A:296 , HIS A:298 , PHE A:311 , SER A:405 , TYR A:420 , ASN A:451 , ASP A:471 , HOH A:1036
BINDING SITE FOR RESIDUE 096 A 1002
3
AC3
SOFTWARE
TYR B:117 , GLN B:118 , PHE B:119 , TRP B:120 , ASN B:179 , TYR B:180 , VAL B:181 , ASN B:246 , PHE B:247 , LEU B:248 , VAL B:250 , ARG B:255 , SER B:256 , LYS B:257 , ARG B:258 , VAL B:259 , ALA B:260 , PRO B:261 , THR B:268 , PHE B:277 , TYR B:281 , THR B:282 , LEU B:287 , TYR B:479 , HOH B:599 , HOH B:702 , HOH B:715 , HOH B:748 , HOH B:749 , HOH B:765 , HOH B:769 , HOH B:821 , HOH B:914
BINDING SITE FOR RESIDUE MYA B 2001
4
AC4
SOFTWARE
VAL B:181 , GLU B:182 , ASP B:183 , ASP B:184 , PHE B:188 , ARG B:189 , TYR B:296 , HIS B:298 , PHE B:311 , SER B:405 , TYR B:420 , ASN B:451 , ASP B:471
BINDING SITE FOR RESIDUE 096 B 2002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: NMT_1 (A:244-252,B:244-252)
2: NMT_2 (A:466-472,B:466-472)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NMT_1
PS00975
Myristoyl-CoA:protein N-myristoyltransferase signature 1.
NMT1_HUMAN
244-252
2
A:244-252
B:244-252
2
NMT_2
PS00976
Myristoyl-CoA:protein N-myristoyltransferase signature 2.
NMT1_HUMAN
466-472
2
A:466-472
B:466-472
[
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Exons
(10, 20)
Info
All Exons
Exon 1.3 (A:115-129 | B:115-129)
Exon 1.4 (A:129-168 | B:129-168)
Exon 1.5 (A:169-199 | B:169-199)
Exon 1.6 (A:199-238 | B:199-238)
Exon 1.7 (A:238-295 | B:238-295)
Exon 1.8 (A:295-331 | B:295-331)
Exon 1.9 (A:332-388 | B:332-388)
Exon 1.10 (A:389-444 | B:389-444 (gaps))
Exon 1.11 (A:445-490 | B:445-490)
Exon 1.12 (A:491-496 | B:491-496)
View:
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All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000258960
1
ENSE00001324312
chr17:
43138680-43138828
149
NMT1_HUMAN
1-44
44
0
-
-
1.2
ENST00000258960
2
ENSE00001134100
chr17:
43159012-43159120
109
NMT1_HUMAN
44-80
37
0
-
-
1.3
ENST00000258960
3
ENSE00000924941
chr17:
43163876-43164020
145
NMT1_HUMAN
81-129
49
2
A:115-129
B:115-129
15
15
1.4
ENST00000258960
4
ENSE00000924940
chr17:
43171053-43171171
119
NMT1_HUMAN
129-168
40
2
A:129-168
B:129-168
40
40
1.5
ENST00000258960
5
ENSE00000924939
chr17:
43173562-43173653
92
NMT1_HUMAN
169-199
31
2
A:169-199
B:169-199
31
31
1.6
ENST00000258960
6
ENSE00000924938
chr17:
43174496-43174612
117
NMT1_HUMAN
199-238
40
2
A:199-238
B:199-238
40
40
1.7
ENST00000258960
7
ENSE00000924937
chr17:
43175750-43175920
171
NMT1_HUMAN
238-295
58
2
A:238-295
B:238-295
58
58
1.8
ENST00000258960
8
ENSE00000924936
chr17:
43176773-43176881
109
NMT1_HUMAN
295-331
37
2
A:295-331
B:295-331
37
37
1.9
ENST00000258960
9
ENSE00000924935
chr17:
43180319-43180489
171
NMT1_HUMAN
332-388
57
2
A:332-388
B:332-388
57
57
1.10
ENST00000258960
10
ENSE00000924934
chr17:
43181077-43181244
168
NMT1_HUMAN
389-444
56
2
A:389-444
B:389-444 (gaps)
56
56
1.11
ENST00000258960
11
ENSE00000924933
chr17:
43182227-43182364
138
NMT1_HUMAN
445-490
46
2
A:445-490
B:445-490
46
46
1.12
ENST00000258960
12
ENSE00001110185
chr17:
43182987-43186377
3391
NMT1_HUMAN
491-496
6
2
A:491-496
B:491-496
6
6
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3iu2a1 (A:115-295)
1b: SCOP_d3iu2a2 (A:296-496)
1c: SCOP_d3iu2b1 (B:115-295)
1d: SCOP_d3iu2b2 (B:296-496)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Acyl-CoA N-acyltransferases (Nat)
(250)
Superfamily
:
Acyl-CoA N-acyltransferases (Nat)
(250)
Family
:
automated matches
(63)
Protein domain
:
automated matches
(63)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d3iu2a1
A:115-295
1b
d3iu2a2
A:296-496
1c
d3iu2b1
B:115-295
1d
d3iu2b2
B:296-496
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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