PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3ISS
Biol. Unit 1
Info
Asym.Unit (1.6 MB)
Biol.Unit 1 (146 KB)
Biol.Unit 10 (148 KB)
Biol.Unit 11 (146 KB)
Biol.Unit 12 (149 KB)
Biol.Unit 2 (147 KB)
Biol.Unit 3 (146 KB)
Biol.Unit 4 (146 KB)
Biol.Unit 5 (146 KB)
Biol.Unit 6 (147 KB)
Biol.Unit 7 (147 KB)
Biol.Unit 8 (145 KB)
Biol.Unit 9 (148 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF ENOLPYRUVYL-UDP-GLCNAC SYNTHASE (MURA):UDP-N-ACETYLMURAMIC ACID:PHOSPHITE FROM ESCHERICHIA COLI
Authors
:
S. G. Jackson, F. Zhang, P. Chindemi, M. S. Junop, P. J. Berti
Date
:
27 Aug 09 (Deposition) - 24 Nov 09 (Release) - 27 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Biol. Unit 11: K (1x)
Biol. Unit 12: L (1x)
Keywords
:
Protein-Ligand, Cell Cycle, Cell Division, Cell Shape, Cell Wall Biogenesis/Degradation, Peptidoglycan Synthesis, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. G. Jackson, F. Zhang, P. Chindemi, M. S. Junop, P. J. Berti
Evidence Of Kinetic Control Of Ligand Binding And Staged Product Release In Mura (Enolpyruvyl Udp-Glcnac Synthase)-Catalyzed Reactions .
Biochemistry V. 48 11715 2009
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUa)
1b: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUb)
1c: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUc)
1d: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUd)
1e: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUe)
1f: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUf)
1g: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUg)
1h: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUh)
1i: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUi)
1j: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUj)
1k: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUk)
1l: URIDINE-DIPHOSPHATE-2(N-ACETYLGLUC... (EPUl)
2a: PHOSPHITE ION (PO3a)
2b: PHOSPHITE ION (PO3b)
2c: PHOSPHITE ION (PO3c)
2d: PHOSPHITE ION (PO3d)
2e: PHOSPHITE ION (PO3e)
2f: PHOSPHITE ION (PO3f)
2g: PHOSPHITE ION (PO3g)
2h: PHOSPHITE ION (PO3h)
2i: PHOSPHITE ION (PO3i)
2j: PHOSPHITE ION (PO3j)
2k: PHOSPHITE ION (PO3k)
2l: PHOSPHITE ION (PO3l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EPU
1
Ligand/Ion
URIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL) BUTYRICACID
2
PO3
1
Ligand/Ion
PHOSPHITE ION
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:91 , ARG A:397
BINDING SITE FOR RESIDUE PO3 A 501
2
AC2
SOFTWARE
LYS A:22 , ASN A:23 , ALA A:119 , ARG A:120 , PRO A:121 , VAL A:122 , ASP A:123 , LEU A:124 , LYS A:160 , VAL A:161 , SER A:162 , VAL A:163 , GLY A:164 , ASP A:305 , VAL A:327 , PHE A:328 , LEU A:370 , HOH A:425 , HOH A:445 , HOH A:780
BINDING SITE FOR RESIDUE EPU A 601
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d3issa_ (A:)
1b: SCOP_d3isse_ (E:)
1c: SCOP_d3issf_ (F:)
1d: SCOP_d3issg_ (G:)
1e: SCOP_d3issh_ (H:)
1f: SCOP_d3issi_ (I:)
1g: SCOP_d3issj_ (J:)
1h: SCOP_d3issk_ (K:)
1i: SCOP_d3issl_ (L:)
1j: SCOP_d3issb_ (B:)
1k: SCOP_d3issc_ (C:)
1l: SCOP_d3issd_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
IF3-like
(127)
Superfamily
:
EPT/RTPC-like
(82)
Family
:
Enolpyruvate transferase, EPT
(68)
Protein domain
:
automated matches
(15)
Escherichia coli K-12 [TaxId: 83333]
(8)
1a
d3issa_
A:
1b
d3isse_
E:
1c
d3issf_
F:
1d
d3issg_
G:
1e
d3issh_
H:
1f
d3issi_
I:
1g
d3issj_
J:
1h
d3issk_
K:
1i
d3issl_
L:
1j
d3issb_
B:
1k
d3issc_
C:
1l
d3issd_
D:
[
close SCOP info
]
CATH Domains
(1, 24)
Info
all CATH domains
1a: CATH_3issA01 (A:1-18,A:230-418)
1b: CATH_3issB01 (B:1-18,B:230-418)
1c: CATH_3issK01 (K:1-18,K:230-418)
1d: CATH_3issL01 (L:1-18,L:230-418)
1e: CATH_3issA02 (A:21-228)
1f: CATH_3issB02 (B:21-228)
1g: CATH_3issC02 (C:21-228)
1h: CATH_3issD02 (D:21-228)
1i: CATH_3issE02 (E:21-228)
1j: CATH_3issF02 (F:21-228)
1k: CATH_3issG02 (G:21-228)
1l: CATH_3issH02 (H:21-228)
1m: CATH_3issC01 (C:1-18,C:230-418)
1n: CATH_3issI02 (I:21-228)
1o: CATH_3issJ02 (J:21-228)
1p: CATH_3issK02 (K:21-228)
1q: CATH_3issL02 (L:21-228)
1r: CATH_3issD01 (D:1-18,D:230-418)
1s: CATH_3issE01 (E:1-18,E:230-418)
1t: CATH_3issF01 (F:1-18,F:230-418)
1u: CATH_3issG01 (G:1-18,G:230-418)
1v: CATH_3issH01 (H:1-18,H:230-418)
1w: CATH_3issI01 (I:1-18,I:230-418)
1x: CATH_3issJ01 (J:1-18,J:230-418)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-beta prism
(50)
Topology
:
UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain
(50)
Homologous Superfamily
:
[code=3.65.10.10, no name defined]
(47)
Escherichia coli k-12. Organism_taxid: 83333. Strain: k12.
(1)
1a
3issA01
A:1-18,A:230-418
1b
3issB01
B:1-18,B:230-418
1c
3issK01
K:1-18,K:230-418
1d
3issL01
L:1-18,L:230-418
1e
3issA02
A:21-228
1f
3issB02
B:21-228
1g
3issC02
C:21-228
1h
3issD02
D:21-228
1i
3issE02
E:21-228
1j
3issF02
F:21-228
1k
3issG02
G:21-228
1l
3issH02
H:21-228
1m
3issC01
C:1-18,C:230-418
1n
3issI02
I:21-228
1o
3issJ02
J:21-228
1p
3issK02
K:21-228
1q
3issL02
L:21-228
1r
3issD01
D:1-18,D:230-418
1s
3issE01
E:1-18,E:230-418
1t
3issF01
F:1-18,F:230-418
1u
3issG01
G:1-18,G:230-418
1v
3issH01
H:1-18,H:230-418
1w
3issI01
I:1-18,I:230-418
1x
3issJ01
J:1-18,J:230-418
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (1.6 MB)
Header - Asym.Unit
Biol.Unit 1 (146 KB)
Header - Biol.Unit 1
Biol.Unit 10 (148 KB)
Header - Biol.Unit 10
Biol.Unit 11 (146 KB)
Header - Biol.Unit 11
Biol.Unit 12 (149 KB)
Header - Biol.Unit 12
Biol.Unit 2 (147 KB)
Header - Biol.Unit 2
Biol.Unit 3 (146 KB)
Header - Biol.Unit 3
Biol.Unit 4 (146 KB)
Header - Biol.Unit 4
Biol.Unit 5 (146 KB)
Header - Biol.Unit 5
Biol.Unit 6 (147 KB)
Header - Biol.Unit 6
Biol.Unit 7 (147 KB)
Header - Biol.Unit 7
Biol.Unit 8 (145 KB)
Header - Biol.Unit 8
Biol.Unit 9 (148 KB)
Header - Biol.Unit 9
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3ISS
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help