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3ISE
Asym. Unit
Info
Asym.Unit (623 KB)
Biol.Unit 1 (610 KB)
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(1)
Title
:
STRUCTURE OF MINERALIZED BFRB (DOUBLE SOAK) FROM PSEUDOMONAS AERUGINOSA TO 2.8A RESOLUTION
Authors
:
S. Lovell, S. K. Weeratunga, K. P. Battaile, M. Rivera
Date
:
25 Aug 09 (Deposition) - 02 Feb 10 (Release) - 23 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X (1x)
Keywords
:
Electron Transport; Iron Storage, Heme, Iron, Iron Storage, Metal-Binding, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. K. Weeratunga, S. Lovell, H. Yao, K. P. Battaile, C. J. Fischer, C. E. Gee, M. Rivera
Structural Studies Of Bacterioferritin B From Pseudomonas Aeruginosa Suggest A Gating Mechanism For Iron Uptake Via The Ferroxidase Center
Biochemistry V. 49 1160 2010
[
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Hetero Components
(3, 42)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
1e: FE (III) ION (FEe)
1f: FE (III) ION (FEf)
1g: FE (III) ION (FEg)
1h: FE (III) ION (FEh)
1i: FE (III) ION (FEi)
1j: FE (III) ION (FEj)
1k: FE (III) ION (FEk)
1l: FE (III) ION (FEl)
1m: FE (III) ION (FEm)
1n: FE (III) ION (FEn)
1o: FE (III) ION (FEo)
1p: FE (III) ION (FEp)
1q: FE (III) ION (FEq)
1r: FE (III) ION (FEr)
1s: FE (III) ION (FEs)
1t: FE (III) ION (FEt)
1u: FE (III) ION (FEu)
1v: FE (III) ION (FEv)
1w: FE (III) ION (FEw)
1x: FE (III) ION (FEx)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
2f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
2g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
2h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
2i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
2j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
2k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
2l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
24
Ligand/Ion
FE (III) ION
2
HEM
12
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
K
6
Ligand/Ion
POTASSIUM ION
[
close Hetero Component info
]
Sites
(42, 42)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:22 , ASN A:23 , PHE A:26 , TYR A:45 , MET A:52 , LYS A:53 , LEU B:19 , ILE B:22 , ASN B:23 , PHE B:26 , TYR B:45 , MET B:52 , LYS B:53
BINDING SITE FOR RESIDUE HEM B 159
02
AC2
SOFTWARE
ILE C:22 , ASN C:23 , PHE C:26 , TYR C:45 , MET C:52 , LYS C:53 , LEU D:19 , ASN D:23 , PHE D:26 , TYR D:45 , MET D:52 , LYS D:53
BINDING SITE FOR RESIDUE HEM D 159
03
AC3
SOFTWARE
ILE E:22 , ASN E:23 , PHE E:26 , TYR E:45 , MET E:52 , LYS E:53 , ASN F:23 , PHE F:26 , TYR F:45 , ILE F:49 , MET F:52 , LYS F:53
BINDING SITE FOR RESIDUE HEM E 159
04
AC4
SOFTWARE
TYR G:45 , ILE G:49 , MET G:52 , LYS G:53 , LEU H:19 , ILE H:22 , ASN H:23 , TYR H:45 , MET H:52 , LYS H:53
BINDING SITE FOR RESIDUE HEM H 159
05
AC5
SOFTWARE
ASN K:23 , TYR K:45 , MET K:52 , LYS K:53 , ALA K:55 , ASN L:23 , PHE L:26 , TYR L:45 , MET L:52 , LYS L:53
BINDING SITE FOR RESIDUE HEM L 159
06
AC6
SOFTWARE
ASN M:23 , PHE M:26 , TYR M:45 , MET M:52 , LYS M:53 , LEU N:19 , ASN N:23 , PHE N:26 , TYR N:45 , ILE N:49 , MET N:52
BINDING SITE FOR RESIDUE HEM M 159
07
AC7
SOFTWARE
ASN O:23 , PHE O:26 , TYR O:45 , MET O:52 , ALA O:55 , ILE P:22 , ASN P:23 , PHE P:26 , TYR P:45 , MET P:52 , LYS P:53
BINDING SITE FOR RESIDUE HEM P 159
08
AC8
SOFTWARE
ASN Q:23 , TYR Q:45 , MET Q:52 , PHE R:26 , TYR R:45 , ILE R:49 , MET R:52
BINDING SITE FOR RESIDUE HEM R 159
09
AC9
SOFTWARE
ASN S:23 , PHE S:26 , TYR S:45 , MET S:52 , LYS S:53 , LEU T:19 , ASN T:23 , PHE T:26 , TYR T:45 , MET T:52
BINDING SITE FOR RESIDUE HEM S 159
10
BC1
SOFTWARE
ILE U:22 , ASN U:23 , TYR U:45 , MET U:52 , LYS U:53 , ALA U:55 , ASP U:56 , ASN V:23 , PHE V:26 , TYR V:45 , MET V:52 , LEU V:71
BINDING SITE FOR RESIDUE HEM U 159
11
BC2
SOFTWARE
ASN W:23 , PHE W:26 , TYR W:45 , ILE W:49 , MET W:52 , LYS W:53 , ILE X:22 , ASN X:23 , PHE X:26 , TYR X:45 , MET X:52
BINDING SITE FOR RESIDUE HEM W 159
12
BC3
SOFTWARE
ASN I:23 , PHE I:26 , TYR I:45 , ILE I:49 , MET I:52 , LYS I:53 , ASN J:23 , PHE J:26 , TYR J:45 , MET J:52 , LYS J:53
BINDING SITE FOR RESIDUE HEM J 159
13
BC4
SOFTWARE
HIS N:153 , HIS P:155
BINDING SITE FOR RESIDUE FE P 160
14
BC5
SOFTWARE
HIS B:155 , ARG H:39 , HIS H:153
BINDING SITE FOR RESIDUE FE B 160
15
BC6
SOFTWARE
HIS G:153 , HIS I:155
BINDING SITE FOR RESIDUE FE G 159
16
BC7
SOFTWARE
HIS C:153 , HIS K:155
BINDING SITE FOR RESIDUE FE K 159
17
BC8
SOFTWARE
HIS B:153 , HIS D:155
BINDING SITE FOR RESIDUE FE B 161
18
BC9
SOFTWARE
HIS F:153 , HIS H:155
BINDING SITE FOR RESIDUE FE F 159
19
CC1
SOFTWARE
HIS E:155 , HIS J:153
BINDING SITE FOR RESIDUE FE E 160
20
CC2
SOFTWARE
HIS C:155 , HIS U:153
BINDING SITE FOR RESIDUE FE C 159
21
CC3
SOFTWARE
HIS K:153 , HIS S:155
BINDING SITE FOR RESIDUE FE K 160
22
CC4
SOFTWARE
HIS A:153 , HIS X:155
BINDING SITE FOR RESIDUE FE A 159
23
CC5
SOFTWARE
HIS A:155 , HIS L:153
BINDING SITE FOR RESIDUE FE A 160
24
CC6
SOFTWARE
HIS G:155 , HIS W:153
BINDING SITE FOR RESIDUE FE G 160
25
CC7
SOFTWARE
MET L:154 , HIS L:155 , HIS M:153
BINDING SITE FOR RESIDUE FE L 160
26
CC8
SOFTWARE
HIS M:155 , HIS X:153
BINDING SITE FOR RESIDUE FE M 160
27
CC9
SOFTWARE
HIS R:153 , HIS T:155
BINDING SITE FOR RESIDUE FE T 159
28
DC1
SOFTWARE
HIS Q:155 , HIS V:153
BINDING SITE FOR RESIDUE FE V 159
29
DC2
SOFTWARE
HIS E:153 , HIS V:155
BINDING SITE FOR RESIDUE FE V 160
30
DC3
SOFTWARE
HIS J:155 , HIS Q:153
BINDING SITE FOR RESIDUE FE Q 159
31
DC4
SOFTWARE
MET N:154 , HIS N:155 , HIS T:153
BINDING SITE FOR RESIDUE FE N 159
32
DC5
SOFTWARE
ARG I:39 , HIS I:153 , HIS O:155
BINDING SITE FOR RESIDUE FE I 159
33
DC6
SOFTWARE
HIS O:153 , HIS W:155
BINDING SITE FOR RESIDUE FE W 160
34
DC7
SOFTWARE
HIS S:153 , MET U:154 , HIS U:155
BINDING SITE FOR RESIDUE FE U 160
35
DC8
SOFTWARE
HIS D:153 , HIS F:155
BINDING SITE FOR RESIDUE FE D 160
36
DC9
SOFTWARE
ARG P:39 , HIS P:153 , HIS R:155
BINDING SITE FOR RESIDUE FE P 161
37
EC1
SOFTWARE
ASN A:148 , GLN A:151 , ASN L:148 , GLN L:151 , ASN M:148 , GLN M:151 , ASN X:148 , GLN X:151
BINDING SITE FOR RESIDUE K A 161
38
EC2
SOFTWARE
ASN G:148 , GLN G:151 , ASN I:148 , GLN I:151 , ASN O:148 , GLN O:151 , ASN W:148 , GLN W:151
BINDING SITE FOR RESIDUE K G 161
39
EC3
SOFTWARE
ASN C:148 , GLN C:151 , ASN K:148 , GLN K:151 , ASN S:148 , GLN S:151 , ASN U:148 , GLN U:151
BINDING SITE FOR RESIDUE K C 160
40
EC4
SOFTWARE
ASN B:148 , GLN B:151 , ASN D:148 , GLN D:151 , ASN F:148 , GLN F:151 , ASN H:148 , GLN H:151
BINDING SITE FOR RESIDUE K B 162
41
EC5
SOFTWARE
ASN E:148 , GLN E:151 , ASN J:148 , GLN J:151 , ASN Q:148 , GLN Q:151 , ASN V:148 , GLN V:151
BINDING SITE FOR RESIDUE K V 161
42
EC6
SOFTWARE
ASN N:148 , GLN N:151 , ASN P:148 , GLN P:151 , ASN R:148 , GLN R:151 , ASN T:148 , GLN T:151
BINDING SITE FOR RESIDUE K N 160
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d3isea_ (A:)
1b: SCOP_d3iseb_ (B:)
1c: SCOP_d3isec_ (C:)
1d: SCOP_d3ised_ (D:)
1e: SCOP_d3isee_ (E:)
1f: SCOP_d3isef_ (F:)
1g: SCOP_d3iseg_ (G:)
1h: SCOP_d3iseh_ (H:)
1i: SCOP_d3isei_ (I:)
1j: SCOP_d3isej_ (J:)
1k: SCOP_d3isek_ (K:)
1l: SCOP_d3isel_ (L:)
1m: SCOP_d3isem_ (M:)
1n: SCOP_d3isen_ (N:)
1o: SCOP_d3iseo_ (O:)
1p: SCOP_d3isep_ (P:)
1q: SCOP_d3iseq_ (Q:)
1r: SCOP_d3iser_ (R:)
1s: SCOP_d3ises_ (S:)
1t: SCOP_d3iset_ (T:)
1u: SCOP_d3iseu_ (U:)
1v: SCOP_d3isev_ (V:)
1w: SCOP_d3isew_ (W:)
1x: SCOP_d3isex_ (X:)
View:
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Classes
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)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
automated matches
(70)
Pseudomonas aeruginosa [TaxId: 287]
(5)
1a
d3isea_
A:
1b
d3iseb_
B:
1c
d3isec_
C:
1d
d3ised_
D:
1e
d3isee_
E:
1f
d3isef_
F:
1g
d3iseg_
G:
1h
d3iseh_
H:
1i
d3isei_
I:
1j
d3isej_
J:
1k
d3isek_
K:
1l
d3isel_
L:
1m
d3isem_
M:
1n
d3isen_
N:
1o
d3iseo_
O:
1p
d3isep_
P:
1q
d3iseq_
Q:
1r
d3iser_
R:
1s
d3ises_
S:
1t
d3iset_
T:
1u
d3iseu_
U:
1v
d3isev_
V:
1w
d3isew_
W:
1x
d3isex_
X:
[
close SCOP info
]
CATH Domains
(1, 24)
Info
all CATH domains
1a: CATH_3iseW00 (W:1-156)
1b: CATH_3iseH00 (H:2-156)
1c: CATH_3iseR00 (R:2-156)
1d: CATH_3iseA00 (A:3-156)
1e: CATH_3iseB00 (B:3-156)
1f: CATH_3iseC00 (C:3-156)
1g: CATH_3iseD00 (D:3-156)
1h: CATH_3iseE00 (E:3-156)
1i: CATH_3iseF00 (F:3-156)
1j: CATH_3iseG00 (G:3-156)
1k: CATH_3iseI00 (I:3-156)
1l: CATH_3iseJ00 (J:3-156)
1m: CATH_3iseK00 (K:3-156)
1n: CATH_3iseL00 (L:3-156)
1o: CATH_3iseM00 (M:3-156)
1p: CATH_3iseN00 (N:3-156)
1q: CATH_3iseO00 (O:3-156)
1r: CATH_3iseP00 (P:3-156)
1s: CATH_3iseQ00 (Q:3-156)
1t: CATH_3iseS00 (S:3-156)
1u: CATH_3iseT00 (T:3-156)
1v: CATH_3iseU00 (U:3-156)
1w: CATH_3iseV00 (V:3-156)
1x: CATH_3iseX00 (X:3-156)
View:
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Pseudomonas aeruginosa. Organism_taxid: 287.
(4)
1a
3iseW00
W:1-156
1b
3iseH00
H:2-156
1c
3iseR00
R:2-156
1d
3iseA00
A:3-156
1e
3iseB00
B:3-156
1f
3iseC00
C:3-156
1g
3iseD00
D:3-156
1h
3iseE00
E:3-156
1i
3iseF00
F:3-156
1j
3iseG00
G:3-156
1k
3iseI00
I:3-156
1l
3iseJ00
J:3-156
1m
3iseK00
K:3-156
1n
3iseL00
L:3-156
1o
3iseM00
M:3-156
1p
3iseN00
N:3-156
1q
3iseO00
O:3-156
1r
3iseP00
P:3-156
1s
3iseQ00
Q:3-156
1t
3iseS00
S:3-156
1u
3iseT00
T:3-156
1v
3iseU00
U:3-156
1w
3iseV00
V:3-156
1x
3iseX00
X:3-156
[
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Pfam Domains
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all PFAM domains
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