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3IS7
Asym. Unit
Info
Asym.Unit (653 KB)
Biol.Unit 1 (641 KB)
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(1)
Title
:
STRUCTURE OF MINERALIZED BFRB FROM PSEUDOMONAS AERUGINOSA TO 2.1A RESOLUTION
Authors
:
S. Lovell, S. K. Weeratunga, K. P. Battaile, M. Rivera
Date
:
25 Aug 09 (Deposition) - 02 Feb 10 (Release) - 23 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X (1x)
Keywords
:
Electron Transport; Iron Storage, Heme, Iron, Iron Storage, Metal-Binding, Electron Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. K. Weeratunga, S. Lovell, H. Yao, K. P. Battaile, C. J. Fischer, C. E. Gee, M. Rivera
Structural Studies Of Bacterioferritin B From Pseudomonas Aeruginosa Suggest A Gating Mechanism For Iron Uptake Via The Ferroxidase Center
Biochemistry V. 49 1160 2010
[
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
1e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
1f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
1g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
1h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
1i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
1j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
1k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
1l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
2c: POTASSIUM ION (Kc)
2d: POTASSIUM ION (Kd)
2e: POTASSIUM ION (Ke)
2f: POTASSIUM ION (Kf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
12
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
K
6
Ligand/Ion
POTASSIUM ION
[
close Hetero Component info
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:23 , PHE A:26 , TYR A:45 , ILE A:49 , MET A:52 , LYS A:53 , HOH A:1053 , LEU B:19 , ILE B:22 , ASN B:23 , PHE B:26 , TYR B:45 , ILE B:49 , MET B:52 , LYS B:53
BINDING SITE FOR RESIDUE HEM A 159
02
AC2
SOFTWARE
ASN A:148 , GLN A:151 , ASN L:148 , GLN L:151 , ASN M:148 , GLN M:151 , ASN X:148 , GLN X:151
BINDING SITE FOR RESIDUE K A 160
03
AC3
SOFTWARE
ASN B:148 , GLN B:151 , ASN D:148 , GLN D:151 , ASN F:148 , GLN F:151 , ASN H:148 , GLN H:151
BINDING SITE FOR RESIDUE K B 159
04
AC4
SOFTWARE
ASN C:23 , PHE C:26 , TYR C:45 , MET C:52 , LYS C:53 , HOH C:198 , HOH C:378 , LEU D:19 , ASN D:23 , PHE D:26 , TYR D:45 , ILE D:49 , MET D:52 , LYS D:53
BINDING SITE FOR RESIDUE HEM C 159
05
AC5
SOFTWARE
ASN C:148 , GLN C:151 , ASN K:148 , GLN K:151 , ASN S:148 , GLN S:151 , ASN U:148 , GLN U:151
BINDING SITE FOR RESIDUE K C 160
06
AC6
SOFTWARE
ASN E:148 , GLN E:151 , ASN J:148 , GLN J:151 , ASN Q:148 , GLN Q:151 , ASN V:148 , GLN V:151
BINDING SITE FOR RESIDUE K E 159
07
AC7
SOFTWARE
ILE E:22 , ASN E:23 , PHE E:26 , TYR E:45 , MET E:52 , LYS E:53 , LEU F:19 , ASN F:23 , PHE F:26 , TYR F:45 , ILE F:49 , MET F:52 , LYS F:53 , HOH F:1019 , HOH F:1204 , HOH F:1330
BINDING SITE FOR RESIDUE HEM F 159
08
AC8
SOFTWARE
ASN G:148 , GLN G:151 , ASN I:148 , GLN I:151 , ASN O:148 , GLN O:151 , ASN W:148 , GLN W:151
BINDING SITE FOR RESIDUE K G 159
09
AC9
SOFTWARE
ASN G:23 , PHE G:26 , TYR G:45 , ILE G:49 , MET G:52 , LYS G:53 , LEU H:19 , ASN H:23 , TYR H:45 , ILE H:49 , MET H:52 , LYS H:53 , HOH H:1336 , HOH H:1373
BINDING SITE FOR RESIDUE HEM H 159
10
BC1
SOFTWARE
ASN I:23 , PHE I:26 , TYR I:45 , MET I:52 , LYS I:53 , LEU J:19 , ASN J:23 , PHE J:26 , TYR J:45 , MET J:52 , LYS J:53 , HOH J:1326
BINDING SITE FOR RESIDUE HEM J 159
11
BC2
SOFTWARE
ASN K:23 , PHE K:26 , TYR K:45 , ILE K:49 , MET K:52 , LYS K:53 , ASP K:56 , HOH K:1022 , HOH K:1394 , ASN L:23 , PHE L:26 , TYR L:45 , MET L:52 , LYS L:53
BINDING SITE FOR RESIDUE HEM K 159
12
BC3
SOFTWARE
ILE M:22 , ASN M:23 , PHE M:26 , TYR M:45 , ILE M:49 , MET M:52 , LYS M:53 , LEU N:19 , ASN N:23 , PHE N:26 , TYR N:45 , ILE N:49 , MET N:52 , LYS N:53 , HOH N:557 , HOH N:860 , HOH N:1359
BINDING SITE FOR RESIDUE HEM N 159
13
BC4
SOFTWARE
ASN N:148 , GLN N:151 , ASN P:148 , GLN P:151 , ASN R:148 , GLN R:151 , ASN T:148 , GLN T:151
BINDING SITE FOR RESIDUE K N 160
14
BC5
SOFTWARE
ASN O:23 , PHE O:26 , TYR O:45 , ILE O:49 , MET O:52 , LYS O:53 , LEU P:19 , ILE P:22 , ASN P:23 , PHE P:26 , TYR P:45 , MET P:52 , LYS P:53 , HOH P:1219
BINDING SITE FOR RESIDUE HEM P 159
15
BC6
SOFTWARE
ILE Q:22 , ASN Q:23 , PHE Q:26 , TYR Q:45 , MET Q:52 , LYS Q:53 , HOH Q:1241 , HOH Q:1270 , HOH Q:1399 , ASN R:23 , PHE R:26 , TYR R:45 , ILE R:49 , MET R:52 , LYS R:53
BINDING SITE FOR RESIDUE HEM Q 159
16
BC7
SOFTWARE
ASN S:23 , PHE S:26 , TYR S:45 , ILE S:49 , MET S:52 , LYS S:53 , ALA S:55 , HOH S:1149 , HOH S:1286 , HOH S:1393 , LEU T:19 , ASN T:23 , PHE T:26 , TYR T:45 , MET T:52 , LYS T:53 , HOH T:1411
BINDING SITE FOR RESIDUE HEM S 159
17
BC8
SOFTWARE
ASN U:23 , PHE U:26 , TYR U:45 , ILE U:49 , MET U:52 , LYS U:53 , ASN V:23 , PHE V:26 , TYR V:45 , MET V:52 , LYS V:53 , HOH V:1148
BINDING SITE FOR RESIDUE HEM V 159
18
BC9
SOFTWARE
LEU W:19 , ILE W:22 , ASN W:23 , PHE W:26 , TYR W:45 , ILE W:49 , MET W:52 , ASN X:23 , TYR X:45 , ILE X:49 , MET X:52 , LYS X:53 , HOH X:232 , HOH X:1220
BINDING SITE FOR RESIDUE HEM X 159
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 24)
Info
All SCOP Domains
1a: SCOP_d3is7a_ (A:)
1b: SCOP_d3is7b_ (B:)
1c: SCOP_d3is7c_ (C:)
1d: SCOP_d3is7d_ (D:)
1e: SCOP_d3is7e_ (E:)
1f: SCOP_d3is7f_ (F:)
1g: SCOP_d3is7g_ (G:)
1h: SCOP_d3is7h_ (H:)
1i: SCOP_d3is7i_ (I:)
1j: SCOP_d3is7j_ (J:)
1k: SCOP_d3is7k_ (K:)
1l: SCOP_d3is7l_ (L:)
1m: SCOP_d3is7m_ (M:)
1n: SCOP_d3is7n_ (N:)
1o: SCOP_d3is7o_ (O:)
1p: SCOP_d3is7p_ (P:)
1q: SCOP_d3is7q_ (Q:)
1r: SCOP_d3is7r_ (R:)
1s: SCOP_d3is7s_ (S:)
1t: SCOP_d3is7t_ (T:)
1u: SCOP_d3is7u_ (U:)
1v: SCOP_d3is7v_ (V:)
1w: SCOP_d3is7w_ (W:)
1x: SCOP_d3is7x_ (X:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
automated matches
(70)
Pseudomonas aeruginosa [TaxId: 287]
(5)
1a
d3is7a_
A:
1b
d3is7b_
B:
1c
d3is7c_
C:
1d
d3is7d_
D:
1e
d3is7e_
E:
1f
d3is7f_
F:
1g
d3is7g_
G:
1h
d3is7h_
H:
1i
d3is7i_
I:
1j
d3is7j_
J:
1k
d3is7k_
K:
1l
d3is7l_
L:
1m
d3is7m_
M:
1n
d3is7n_
N:
1o
d3is7o_
O:
1p
d3is7p_
P:
1q
d3is7q_
Q:
1r
d3is7r_
R:
1s
d3is7s_
S:
1t
d3is7t_
T:
1u
d3is7u_
U:
1v
d3is7v_
V:
1w
d3is7w_
W:
1x
d3is7x_
X:
[
close SCOP info
]
CATH Domains
(1, 24)
Info
all CATH domains
1a: CATH_3is7C00 (C:2-156)
1b: CATH_3is7B00 (B:3-156)
1c: CATH_3is7D00 (D:3-156)
1d: CATH_3is7E00 (E:3-156)
1e: CATH_3is7F00 (F:3-156)
1f: CATH_3is7G00 (G:3-156)
1g: CATH_3is7I00 (I:3-156)
1h: CATH_3is7J00 (J:3-156)
1i: CATH_3is7K00 (K:3-156)
1j: CATH_3is7L00 (L:3-156)
1k: CATH_3is7M00 (M:3-156)
1l: CATH_3is7N00 (N:3-156)
1m: CATH_3is7O00 (O:3-156)
1n: CATH_3is7P00 (P:3-156)
1o: CATH_3is7Q00 (Q:3-156)
1p: CATH_3is7S00 (S:3-156)
1q: CATH_3is7T00 (T:3-156)
1r: CATH_3is7U00 (U:3-156)
1s: CATH_3is7V00 (V:3-156)
1t: CATH_3is7X00 (X:3-156)
1u: CATH_3is7A00 (A:4-156)
1v: CATH_3is7H00 (H:2-156)
1w: CATH_3is7R00 (R:2-156)
1x: CATH_3is7W00 (W:2-156)
View:
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Classes
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)
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)
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Pseudomonas aeruginosa. Organism_taxid: 287.
(4)
1a
3is7C00
C:2-156
1b
3is7B00
B:3-156
1c
3is7D00
D:3-156
1d
3is7E00
E:3-156
1e
3is7F00
F:3-156
1f
3is7G00
G:3-156
1g
3is7I00
I:3-156
1h
3is7J00
J:3-156
1i
3is7K00
K:3-156
1j
3is7L00
L:3-156
1k
3is7M00
M:3-156
1l
3is7N00
N:3-156
1m
3is7O00
O:3-156
1n
3is7P00
P:3-156
1o
3is7Q00
Q:3-156
1p
3is7S00
S:3-156
1q
3is7T00
T:3-156
1r
3is7U00
U:3-156
1s
3is7V00
V:3-156
1t
3is7X00
X:3-156
1u
3is7A00
A:4-156
1v
3is7H00
H:2-156
1w
3is7R00
R:2-156
1x
3is7W00
W:2-156
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (653 KB)
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