PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3IQU
Asym. Unit
Info
Asym.Unit (113 KB)
Biol.Unit 1 (211 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN 14-3-3 SIGMA IN COMPLEX WITH RAF1 PEPTIDE (6MER)
Authors
:
C. Ottmann, M. Weyand
Date
:
21 Aug 09 (Deposition) - 01 Sep 10 (Release) - 27 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.05
Chains
:
Asym. Unit : A,P
Biol. Unit 1: A,P (2x)
Keywords
:
Signal Transuction, Nucleus, Phosphoprotein, Secreted, Protein Binding, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Molzan, B. Schumacher, C. Ottmann, A. Baljuls, L. Polzien, M. Weyand, P. Thiel, R. Rose, M. Rose, P. Kuhenne, M. Kaiser, U. R. Rapp, J. Kuhlmann, C. Ottmann
Impaired Binding Of 14-3-3 To C-Raf In Noonan Syndrome Suggests New Approaches In Diseases With Increased Ras Signaling.
Mol. Cell. Biol. V. 30 4698 2010
[
close entry info
]
Hetero Components
(4, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: S-HYDROXYCYSTEINE (CSOa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
4a: PHOSPHOSERINE (SEPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
CSO
1
Mod. Amino Acid
S-HYDROXYCYSTEINE
3
MG
3
Ligand/Ion
MAGNESIUM ION
4
SEP
1
Mod. Amino Acid
PHOSPHOSERINE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:9 , HOH A:601
BINDING SITE FOR RESIDUE CL A 232
2
AC2
SOFTWARE
GLU A:86 , GLU A:89 , HOH A:404 , HOH A:417 , HOH A:424 , HOH A:478
BINDING SITE FOR RESIDUE MG A 233
3
AC3
SOFTWARE
GLU A:75 , GLU A:161 , HOH A:256 , HOH A:273 , HOH A:292 , HOH A:637
BINDING SITE FOR RESIDUE MG A 234
4
AC4
SOFTWARE
GLU A:2 , HOH A:427 , HOH A:498 , HOH A:674
BINDING SITE FOR RESIDUE MG A 235
[
close Site info
]
SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048095 (M155I, chain A, )
2: VAR_037807 (R256S, chain P, )
3: VAR_037808 (S257L, chain P, )
4: VAR_041037 (S259A, chain P, )
5: VAR_037809 (S259F, chain P, )
6: VAR_037810 (T260I, chain P, )
7: VAR_037811 (T260R, chain P, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048095
M
155
I
1433S_HUMAN
Polymorphism
11542705
A
M
155
I
2
UniProt
VAR_037807
R
256
S
RAF1_HUMAN
Disease (NS5)
---
P
R
256
S
3
UniProt
VAR_037808
S
257
L
RAF1_HUMAN
Disease (NS5)
---
P
S
257
L
4
UniProt
VAR_041037
S
259
A
RAF1_HUMAN
Unclassified
---
P
S
259
A
5
UniProt
VAR_037809
S
259
F
RAF1_HUMAN
Disease (NS5)
---
P
S
259
F
6
UniProt
VAR_037810
T
260
I
RAF1_HUMAN
Unclassified
---
P
T
260
I
7
UniProt
VAR_037811
T
260
R
RAF1_HUMAN
Disease (NS5)
---
P
T
260
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: 1433_1 (A:41-51)
2: 1433_2 (A:213-231)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
1433_1
PS00796
14-3-3 proteins signature 1.
1433S_HUMAN
41-51
1
A:41-51
2
1433_2
PS00797
14-3-3 proteins signature 2.
1433S_HUMAN
213-232
1
A:213-231
[
close PROSITE info
]
Exons
(2, 2)
Info
All Exons
Exon 1.7a (P:255-260)
Exon 2.1 (A:1-231)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.6/1.7a
2: Boundary 1.7a/1.9a
3: Boundary -/2.1
4: Boundary 2.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000251849
1a
ENSE00001162426
chr3:
12705725-12705312
414
RAF1_HUMAN
-
0
0
-
-
1.2
ENST00000251849
2
ENSE00000966590
chr3:
12660246-12660014
233
RAF1_HUMAN
1-69
69
0
-
-
1.3a
ENST00000251849
3a
ENSE00000966591
chr3:
12653561-12653449
113
RAF1_HUMAN
70-107
38
0
-
-
1.4
ENST00000251849
4
ENSE00001712492
chr3:
12650834-12650732
103
RAF1_HUMAN
107-141
35
0
-
-
1.5a
ENST00000251849
5a
ENSE00001694126
chr3:
12650422-12650265
158
RAF1_HUMAN
142-194
53
0
-
-
1.6
ENST00000251849
6
ENSE00001594348
chr3:
12647798-12647700
99
RAF1_HUMAN
194-227
34
0
-
-
1.7a
ENST00000251849
7a
ENSE00001732694
chr3:
12645788-12645635
154
RAF1_HUMAN
227-278
52
1
P:255-260
6
1.9a
ENST00000251849
9a
ENSE00001725784
chr3:
12641914-12641887
28
RAF1_HUMAN
279-288
10
0
-
-
1.9c
ENST00000251849
9c
ENSE00001703663
chr3:
12641778-12641651
128
RAF1_HUMAN
288-330
43
0
-
-
1.10a
ENST00000251849
10a
ENSE00001609464
chr3:
12641307-12641190
118
RAF1_HUMAN
331-370
40
0
-
-
1.12c
ENST00000251849
12c
ENSE00001683112
chr3:
12633291-12633207
85
RAF1_HUMAN
370-398
29
0
-
-
1.13a
ENST00000251849
13a
ENSE00001651042
chr3:
12632473-12632297
177
RAF1_HUMAN
398-457
60
0
-
-
1.14a
ENST00000251849
14a
ENSE00001803276
chr3:
12629136-12629090
47
RAF1_HUMAN
457-473
17
0
-
-
1.15b
ENST00000251849
15b
ENSE00001610290
chr3:
12627298-12627180
119
RAF1_HUMAN
473-512
40
0
-
-
1.16
ENST00000251849
16
ENSE00001758370
chr3:
12626752-12626621
132
RAF1_HUMAN
513-556
44
0
-
-
1.17
ENST00000251849
17
ENSE00001748764
chr3:
12626480-12626346
135
RAF1_HUMAN
557-601
45
0
-
-
1.18e
ENST00000251849
18e
ENSE00001671036
chr3:
12626156-12625100
1057
RAF1_HUMAN
602-648
47
0
-
-
2.1
ENST00000339276
1
ENSE00001406083
chr1:
27189653-27190947
1295
1433S_HUMAN
1-265
265
1
A:1-231
231
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3iqua_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
14-3-3 protein
(60)
Family
:
14-3-3 protein
(60)
Protein domain
:
automated matches
(43)
Human (Homo sapiens) [TaxId: 9606]
(38)
1a
d3iqua_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain P
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (113 KB)
Header - Asym.Unit
Biol.Unit 1 (211 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3IQU
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help