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3INQ
Biol. Unit 1
Info
Asym.Unit (58 KB)
Biol.Unit 1 (53 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BCL-XL IN COMPLEX WITH W1191542
Authors
:
W. D. Fairlie, B. J. Smith, P. M. Colman, P. E. Czabotar, E. F. Lee
Date
:
12 Aug 09 (Deposition) - 01 Sep 09 (Release) - 01 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Apoptosis, Alternative Splicing, Membrane, Mitochondrion, Nucleus, Transmembrane
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. F. Lee, P. E. Czabotar, H. Yang, B. E. Sleebs, G. Lessene, P. M. Colman, B. J. Smith, W. D. Fairlie
Conformational Changes In Bcl-2 Pro-Survival Proteins Determine Their Capacity To Bind Ligands
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
3a: 4-[4-(BIPHENYL-3-YLMETHYL)PIPERAZI... (X0Ja)
3b: 4-[4-(BIPHENYL-3-YLMETHYL)PIPERAZI... (X0Jb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
3
X0J
2
Ligand/Ion
4-[4-(BIPHENYL-3-YLMETHYL)PIPERAZIN-1-YL]-N-{[4-({(1R)-3-(DIMETHYLAMINO)-1-[(PHENYLSULFANYL)METHYL]PROPYL}AMINO)-3-NITROPHENYL]SULFONYL}BENZAMIDE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:93 , GLU A:96 , PHE A:97 , TYR A:101 , LEU A:108 , GLU A:129 , ARG A:132 , ASN A:136 , TRP A:137 , GLY A:138 , VAL A:141 , PHE A:191 , TYR A:195 , EDO A:217 , ARG B:102
BINDING SITE FOR RESIDUE X0J A 210
02
AC2
SOFTWARE
VAL A:192 , GLU A:193 , LEU A:194 , HOH A:310 , TYR B:101 , X0J B:210
BINDING SITE FOR RESIDUE EDO A 211
03
AC3
SOFTWARE
SER A:14 , MET A:83 , LYS A:87
BINDING SITE FOR RESIDUE EDO A 212
04
AC4
SOFTWARE
GLN A:88 , ARG A:91 , EDO A:214 , ASP B:11 , ARG B:91
BINDING SITE FOR RESIDUE EDO A 213
05
AC5
SOFTWARE
ASP A:11 , ARG A:91 , EDO A:213 , GLN B:88 , ARG B:91
BINDING SITE FOR RESIDUE EDO A 214
06
AC6
SOFTWARE
GLN A:160 , HOH A:237 , TRP B:24
BINDING SITE FOR RESIDUE EDO A 215
07
AC7
SOFTWARE
LYS A:16 , GLN A:19 , LYS A:20 , HOH A:231 , GLU B:98
BINDING SITE FOR RESIDUE EDO A 216
08
AC8
SOFTWARE
ASN A:136 , ARG A:139 , X0J A:210
BINDING SITE FOR RESIDUE EDO A 217
09
AC9
SOFTWARE
ARG A:100 , TYR A:101 , ARG A:102 , ARG A:103 , ALA A:104
BINDING SITE FOR RESIDUE EDO A 218
10
BC1
SOFTWARE
HOH A:71 , ARG A:165
BINDING SITE FOR RESIDUE EDO A 219
11
BC2
SOFTWARE
GLU A:193 , EDO A:211 , GLU B:96 , PHE B:97 , TYR B:101 , LEU B:108 , ASN B:136 , TRP B:137 , GLY B:138 , VAL B:141 , PHE B:146 , PHE B:191 , TYR B:195
BINDING SITE FOR RESIDUE X0J B 210
12
BC3
SOFTWARE
GLY B:21 , EDO B:213
BINDING SITE FOR RESIDUE EDO B 212
13
BC4
SOFTWARE
GLY B:196 , EDO B:212
BINDING SITE FOR RESIDUE EDO B 213
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(6, 12)
Info
All PROSITE Patterns/Profiles
1: BH4_1 (A:4-24,B:4-24)
2: BH4_2 (A:5-24,B:5-24)
3: BH3 (A:86-100,B:86-100)
4: BCL2_FAMILY (A:90-190,B:90-190)
5: BH1 (A:130-148,B:130-148)
6: BH2 (A:181-192,B:181-192)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BH4_1
PS01260
Apoptosis regulator, Bcl-2 family BH4 motif signature.
B2CL1_HUMAN
4-24
2
A:4-24
B:4-24
2
BH4_2
PS50063
Apoptosis regulator, Bcl-2 family BH4 motif profile.
B2CL1_HUMAN
5-24
2
A:5-24
B:5-24
3
BH3
PS01259
Apoptosis regulator, Bcl-2 family BH3 motif signature.
B2CL1_HUMAN
86-100
2
A:86-100
B:86-100
4
BCL2_FAMILY
PS50062
BCL2-like apoptosis inhibitors family profile.
B2CL1_HUMAN
90-190
2
A:90-190
B:90-190
5
BH1
PS01080
Apoptosis regulator, Bcl-2 family BH1 motif signature.
B2CL1_HUMAN
130-148
2
A:130-148
B:130-148
6
BH2
PS01258
Apoptosis regulator, Bcl-2 family BH2 motif signature.
B2CL1_HUMAN
181-192
2
A:181-192
B:181-192
[
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3inqa_ (A:)
1b: SCOP_d3inqb_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Toxins' membrane translocation domains
(135)
Superfamily
:
Bcl-2 inhibitors of programmed cell death
(113)
Family
:
Bcl-2 inhibitors of programmed cell death
(102)
Protein domain
:
automated matches
(33)
Human (Homo sapiens) [TaxId: 9606]
(31)
1a
d3inqa_
A:
1b
d3inqb_
B:
[
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (58 KB)
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Biol.Unit 1 (53 KB)
Header - Biol.Unit 1
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