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3ING
Asym. Unit
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Asym.Unit (64 KB)
Biol.Unit 1 (112 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HOMOSERINE DEHYDROGENASE (NP_394635.1) FROM THERMOPLASMA ACIDOPHILUM AT 1.95 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
12 Aug 09 (Deposition) - 01 Sep 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Np_394635. 1, Homoserine Dehydrogenase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Oxidoreductase
(Keyword Search:
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Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Homoserine Dehydrogenase (Np_394635. 1) From Thermoplasma Acidophilum At 1. 95 A Resolution
To Be Published
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
3a: SODIUM ION (NAa)
4a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
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No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
3
NA
1
Ligand/Ion
SODIUM ION
4
NDP
1
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:141 , VAL A:144 , ALA A:145 , GLY A:146 , VAL A:148
BINDING SITE FOR RESIDUE NA A 325
2
AC2
SOFTWARE
GLY A:10 , THR A:11 , GLY A:12 , ASN A:13 , VAL A:14 , ASP A:41 , SER A:42 , LYS A:60 , CYS A:88 , THR A:89 , PRO A:90 , ALA A:115 , ASN A:116 , LYS A:117 , ALA A:142 , ARG A:188 , GLY A:198 , GLU A:201 , SER A:202 , PRO A:305 , THR A:308 , HOH A:344 , HOH A:348 , HOH A:350 , HOH A:373 , HOH A:375 , HOH A:378 , HOH A:384 , HOH A:404 , HOH A:410 , HOH A:418 , HOH A:425
BINDING SITE FOR RESIDUE NDP A 326
3
AC3
SOFTWARE
ASN A:13 , LYS A:196 , EDO A:328
BINDING SITE FOR RESIDUE EDO A 327
4
AC4
SOFTWARE
ARG A:188 , ASP A:189 , ASP A:192 , EDO A:327 , HOH A:338
BINDING SITE FOR RESIDUE EDO A 328
5
AC5
SOFTWARE
SER A:172 , TYR A:176 , ARG A:179 , GLY A:280 , MSE A:281 , GLY A:283 , HOH A:403
BINDING SITE FOR RESIDUE EDO A 329
6
AC6
SOFTWARE
ASP A:155 , HIS A:223 , HOH A:347
BINDING SITE FOR RESIDUE EDO A 330
7
AC7
SOFTWARE
ALA A:131 , ASN A:132 , SER A:135 , LYS A:136 , TYR A:137
BINDING SITE FOR RESIDUE EDO A 331
8
AC8
SOFTWARE
VAL A:163 , ILE A:224 , PHE A:225 , HOH A:385
BINDING SITE FOR RESIDUE EDO A 332
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_3ingA02 (A:149-301)
2a: CATH_3ingA01 (A:2-148,A:302-322)
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Classes
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Archaea (Thermoplasma acidophilum)
(1)
1a
3ingA02
A:149-301
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Archaea (Thermoplasma acidophilum)
(1)
2a
3ingA01
A:2-148,A:302-322
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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