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3IML
Asym. Unit
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Asym.Unit (216 KB)
Biol.Unit 1 (112 KB)
Biol.Unit 2 (102 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF S-ADENOSYLMETHIONINE SYNTHETASE FROM BURKHOLDERIA PSEUDOMALLEI
Authors
:
B. L. Staker
Date
:
10 Aug 09 (Deposition) - 22 Sep 09 (Release) - 30 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
S-Adenosylmethionine Synthetase, Structural Genomics, Atp-Binding, Cobalt, Magnesium, Metal-Binding, Nucleotide-Binding, One-Carbon Metabolism, Potassium, Transferase, Seattle Structural Genomics Center For Infectious Disease, Ssgcid
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
L. Baugh, L. A. Gallagher, R. Patrapuvich, M. C. Clifton, A. S. Gardberg, T. E. Edwards, B. Armour, D. W. Begley, S. H. Dieterich, D. M. Dranow, J. Abendroth, J. W. Fairman, D. Fox, B. L. Staker, I. Phan, A. Gillespie, R. Choi, S. Nakazawa-Hewitt, M. T. Nguyen, A. Napuli, L. Barrett, G. W. Buchko, R. Stacy, P. J. Myler, L. J. Stewart, C. Manoil W. C. Van Voorhis
Combining Functional And Structural Genomics To Sample The Essential Burkholderia Structome.
Plos One V. 8 53851 2013
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Hetero Components
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Sites
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PROSITE Patterns/Profiles
(2, 8)
Info
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1: ADOMET_SYNTHASE_1 (A:119-129,B:119-129,C:119-129,D:12...)
2: ADOMET_SYNTHASE_2 (A:262-270,B:262-270,C:262-270,D:26...)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADOMET_SYNTHASE_1
PS00376
S-adenosylmethionine synthase signature 1.
METK_BURPS
119-129
4
A:119-129
B:119-129
C:119-129
D:123-129
2
ADOMET_SYNTHASE_2
PS00377
S-adenosylmethionine synthase signature 2.
METK_BURPS
262-270
4
A:262-270
B:262-270
C:262-270
D:262-270
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Exons
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SCOP Domains
(1, 11)
Info
All SCOP Domains
1a: SCOP_d3imla1 (A:0-102)
1b: SCOP_d3imla2 (A:115-235)
1c: SCOP_d3imld2 (D:123-235)
1d: SCOP_d3imla3 (A:236-388)
1e: SCOP_d3imlb1 (B:5-99)
1f: SCOP_d3imlb2 (B:115-235)
1g: SCOP_d3imlb3 (B:236-387)
1h: SCOP_d3imlc1 (C:4-101)
1i: SCOP_d3imlc2 (C:116-235)
1j: SCOP_d3imlc3 (C:236-378)
1k: SCOP_d3imld1 (D:5-100)
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Class
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Alpha and beta proteins (a+b)
(23004)
Fold
:
S-adenosylmethionine synthetase
(23)
Superfamily
:
S-adenosylmethionine synthetase
(23)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Burkholderia pseudomallei [TaxId: 28450]
(1)
1a
d3imla1
A:0-102
1b
d3imla2
A:115-235
1c
d3imld2
D:123-235
1d
d3imla3
A:236-388
1e
d3imlb1
B:5-99
1f
d3imlb2
B:115-235
1g
d3imlb3
B:236-387
1h
d3imlc1
C:4-101
1i
d3imlc2
C:116-235
1j
d3imlc3
C:236-378
1k
d3imld1
D:5-100
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CATH Domains
(1, 9)
Info
all CATH domains
1a: CATH_3imlC03 (C:116-139,C:274-378)
1b: CATH_3imlB03 (B:115-139,B:274-387)
1c: CATH_3imlA03 (A:115-139,A:274-388)
1d: CATH_3imlA01 (A:0-11,A:140-236)
1e: CATH_3imlC01 (C:4-11,C:140-236)
1f: CATH_3imlB01 (B:5-11,B:140-236)
1g: CATH_3imlA02 (A:12-102,A:237-273)
1h: CATH_3imlC02 (C:12-101,C:237-273)
1i: CATH_3imlB02 (B:12-99,B:237-273)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GMP Synthetase; Chain A, domain 3
(192)
Homologous Superfamily
:
[code=3.30.300.10, no name defined]
(22)
Pseudomonas pseudomallei (Burkholderia pseudomallei)
(1)
1a
3imlC03
C:116-139,C:274-378
1b
3imlB03
B:115-139,B:274-387
1c
3imlA03
A:115-139,A:274-388
1d
3imlA01
A:0-11,A:140-236
1e
3imlC01
C:4-11,C:140-236
1f
3imlB01
B:5-11,B:140-236
1g
3imlA02
A:12-102,A:237-273
1h
3imlC02
C:12-101,C:237-273
1i
3imlB02
B:12-99,B:237-273
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Asymmetric Unit 1
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