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3IMJ
Biol. Unit 1
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Asym.Unit (45 KB)
Biol.Unit 1 (21 KB)
Biol.Unit 2 (21 KB)
Biol.Unit 3 (40 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GRB2 SH2 DOMAIN IN COMPLEX WITH A CYCLOPROPYL-CONSTRAINED AC-PTYR-ILE-ASN-NH2 TRIPEPTIDE MIMIC
Authors
:
J. H. Clements
Date
:
10 Aug 09 (Deposition) - 17 Nov 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.02
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Ligand Preorganization, Peptide Mimics, Golgi Apparatus, Host-Virus Interaction, Phosphoprotein, Sh2 Domain, Sh3 Domain, Signaling Protein-Pseudopeptide Ligand Complex, Signaling Protein-Peptide Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. E. Delorbe, J. H. Clements, M. G. Teresk, A. P. Benfield, H. R. Plake, L. E. Millspaugh, S. F. Martin
Thermodynamic And Structural Effects Of Conformational Constraints In Protein-Ligand Interactions. Entropic Paradoxy Associated With Ligand Preorganization.
J. Am. Chem. Soc. V. 131 16758 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: (1R,2S,3R,1S',1S")PHOSPHORIC ACID ... (AYIa)
1b: (1R,2S,3R,1S',1S")PHOSPHORIC ACID ... (AYIb)
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No.
Name
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Type
Full Name
1
AYI
1
Ligand/Ion
(1R,2S,3R,1S',1S")PHOSPHORIC ACID MONO(4-{2-[1-(1,2-DICARBAMOYLETHYLCARBAMOYL)-3-CARBAMOYLPROPYLCARBAMOYL]-3-METHYLCARBAMOYLCYCLOPROPYL}PHENYL) ESTER
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:30 , ARG A:67 , ARG A:86 , SER A:88 , SER A:90 , SER A:96 , GLN A:106 , HIS A:107 , PHE A:108 , LYS A:109 , LEU A:120 , TRP A:121 , HOH A:218 , HOH A:231
BINDING SITE FOR RESIDUE AYI A 1
2
AC2
SOFTWARE
PRO A:155 , HOH B:46 , ARG B:67 , ARG B:86 , SER B:88 , GLU B:89 , SER B:90 , SER B:96 , GLN B:106 , HIS B:107 , PHE B:108 , LYS B:109 , LEU B:111 , LEU B:120 , TRP B:121 , HOH B:192 , HOH B:204
BINDING SITE FOR RESIDUE AYI B 1
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
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1: SH2 (A:60-152)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
GRB2_HUMAN
60-152
1
A:60-152
-
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Exons
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SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d3imja_ (A:)
1b: SCOP_d3imjb_ (B:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
Growth factor receptor-bound protein 2 (GRB2)
(34)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d3imja_
A:
1b
d3imjb_
B:
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CATH Domains
(1, 2)
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all CATH domains
1a: CATH_3imjA00 (A:55-155)
1b: CATH_3imjB00 (B:56-155)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Human (Homo sapiens)
(147)
1a
3imjA00
A:55-155
1b
3imjB00
B:56-155
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Pfam Domains
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