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3IMC
Biol. Unit 1
Info
Asym.Unit (103 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (98 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PANTOTHENATE SYNTHETASE AT 1.6 ANG RESOLUTION IN COMPLEX WITH FRAGMENT COMPOUND 5-METHOXYINDOLE, SULFATE AND GLYCEROL
Authors
:
A. Ciulli, A. W. Hung, H. L. Silvestre, S. Wen, T. L. Blundell, C. Abell
Date
:
10 Aug 09 (Deposition) - 13 Oct 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Mycobacterium Tuberculosis, Pantothenate Biosynthesis, Enzymes, Ligase, Drug Design, Fragment-Based, , Atp-Binding, Magnesium, Metal- Binding, Nucleotide-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. W. Hung, H. L. Silvestre, S. Wen, A. Ciulli, T. L. Blundell, C. Abell
Application Of Fragment Growing And Fragment Linking To The Discovery Of Inhibitors Of Mycobacterium Tuberculosis Pantothenate Synthetase.
Angew. Chem. Int. Ed. Engl. V. 48 8452 2009
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: 5-METHOXY-1H-INDOLE (BZ3a)
1b: 5-METHOXY-1H-INDOLE (BZ3b)
2a: ETHANOL (EOHa)
2b: ETHANOL (EOHb)
2c: ETHANOL (EOHc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BZ3
2
Ligand/Ion
5-METHOXY-1H-INDOLE
2
EOH
3
Ligand/Ion
ETHANOL
3
GOL
3
Ligand/Ion
GLYCEROL
4
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:44 , GLY A:46 , HIS A:47 , GLY A:158 , LYS A:160 , VAL A:184 , PRO A:185 , THR A:186 , VAL A:187 , MET A:195 , SO4 A:703
BINDING SITE FOR RESIDUE BZ3 A 702
02
AC2
SOFTWARE
HIS A:44 , HIS A:47 , LYS A:160 , SER A:196 , SER A:197 , ARG A:198 , HOH A:594 , BZ3 A:702 , HOH A:860
BINDING SITE FOR RESIDUE SO4 A 703
03
AC3
SOFTWARE
ARG A:56 , PRO A:58 , ARG A:154 , HOH A:426
BINDING SITE FOR RESIDUE SO4 A 706
04
AC4
SOFTWARE
GLN A:72 , VAL A:139 , VAL A:142 , GLN A:164 , HOH A:518
BINDING SITE FOR RESIDUE GOL A 707
05
AC5
SOFTWARE
MET A:109 , TYR A:110 , PRO A:111 , ASP A:112 , GLY A:113 , ARG A:115 , THR A:116 , LYS A:145 , ASP B:174
BINDING SITE FOR RESIDUE GOL A 709
06
AC6
SOFTWARE
LEU A:114 , ARG A:115 , THR A:117 , HOH A:738 , GLN B:119 , PRO B:120
BINDING SITE FOR RESIDUE EOH A 710
07
AC7
SOFTWARE
PRO A:111 , ASP A:112
BINDING SITE FOR RESIDUE EOH A 711
08
AC8
SOFTWARE
MET A:71 , LEU A:114
BINDING SITE FOR RESIDUE EOH A 712
09
AC9
SOFTWARE
HIS B:44 , GLY B:46 , PRO B:185 , THR B:186 , VAL B:187 , MET B:195 , SO4 B:704
BINDING SITE FOR RESIDUE BZ3 B 701
10
BC1
SOFTWARE
HIS B:44 , LYS B:160 , SER B:196 , SER B:197 , HOH B:596 , BZ3 B:701
BINDING SITE FOR RESIDUE SO4 B 704
11
BC2
SOFTWARE
ARG B:200 , HOH B:490
BINDING SITE FOR RESIDUE SO4 B 705
12
BC3
SOFTWARE
PRO B:38 , GLN B:72 , VAL B:142 , GLN B:164 , HOH B:706 , HOH B:933
BINDING SITE FOR RESIDUE GOL B 708
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3imca_ (A:)
1b: SCOP_d3imcb_ (B:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(46)
Protein domain
:
Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
(44)
Mycobacterium tuberculosis [TaxId: 1773]
(39)
1a
d3imca_
A:
1b
d3imcb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3imcB02 (B:186-288)
1b: CATH_3imcA02 (A:186-290)
2a: CATH_3imcA01 (A:4-185)
2b: CATH_3imcB01 (B:2-185)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Pantoate--beta-alanine Ligase; Chain: A,domain 2
(43)
Homologous Superfamily
:
[code=3.30.1300.10, no name defined]
(36)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(19)
1a
3imcB02
B:186-288
1b
3imcA02
A:186-290
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(20)
2a
3imcA01
A:4-185
2b
3imcB01
B:2-185
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (103 KB)
Header - Asym.Unit
Biol.Unit 1 (98 KB)
Header - Biol.Unit 1
Biol.Unit 2 (98 KB)
Header - Biol.Unit 2
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