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3IKA
Biol. Unit 1
Info
Asym.Unit (109 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (54 KB)
Biol.Unit 3 (104 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF EGFR 696-1022 T790M MUTANT COVALENTLY BINDING TO WZ4002
Authors
:
C. -H. Yun, M. J. Eck
Date
:
05 Aug 09 (Deposition) - 12 Jan 10 (Release) - 12 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Egfr, T790M, Wz4002, Wz-4002, Alternative Splicing, Atp- Binding, Cell Membrane, Disease Mutation, Disulfide Bond, Glycoprotein, Isopeptide Bond, Kinase, Membrane, Nucleotide-Binding, Phosphoprotein, Polymorphism, Receptor, Secreted, Transferase, Transmembrane, Tumor Suppressor, Tyrosine-Protein Kinase, Ubl Conjugation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Zhou, D. Ercan, L. Chen, C. H. Yun, D. Li, M. Capelletti, A. B. Cortot, L. Chirieac, R. E. Iacob, R. Padera, J. R. Engen, K. K. Wong, M. J. Eck, N. S. Gray, P. A. Janne
Novel Mutant-Selective Egfr Kinase Inhibitors Against Egfr T790M.
Nature V. 462 1070 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: N-{3-[(5-CHLORO-2-{[2-METHOXY-4-(4... (0UNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0UN
1
Ligand/Ion
N-{3-[(5-CHLORO-2-{[2-METHOXY-4-(4-METHYLPIPERAZIN-1-YL)PHENYL]AMINO}PYRIMIDIN-4-YL)OXY]PHENYL}PROP-2-ENAMIDE
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:25 , HOH A:103 , LEU A:718 , GLY A:719 , VAL A:726 , ALA A:743 , MET A:790 , LEU A:792 , MET A:793 , GLY A:796 , CYS A:797 , ASP A:800 , ARG A:841
BINDING SITE FOR RESIDUE 0UN A 1797
[
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SAPs(SNPs)/Variants
(25, 25)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_026084 (E709A, chain A, )
02: VAR_069498 (E709G, chain A, )
03: VAR_026085 (E709K, chain A, )
04: VAR_026086 (G719A, chain A, )
05: VAR_026087 (G719C, chain A, )
06: VAR_026088 (G719D, chain A, )
07: VAR_019297 (G719S, chain A, )
08: VAR_026089 (G724S, chain A, )
09: VAR_026090 (E734K, chain A, )
10: VAR_026093 (L747F, chain A, )
11: VAR_026095 (R748P, chain A, )
12: VAR_069502 (S768I, chain A, )
13: VAR_069503 (V769M, chain A, )
14: VAR_026097 (Q787R, chain A, )
15: VAR_026098 (M790M, chain A, )
16: VAR_026099 (L833V, chain A, )
17: VAR_026100 (V834L, chain A, )
18: VAR_069504 (H835L, chain A, )
19: VAR_069505 (L838V, chain A, )
20: VAR_026101 (L858M, chain A, )
21: VAR_019298 (L858R, chain A, )
22: VAR_026102 (L861Q, chain A, )
23: VAR_026103 (G873E, chain A, )
24: VAR_019299 (R962G, chain A, )
25: VAR_019300 (H988P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_026084
E
709
A
EGFR_HUMAN
Unclassified
---
A
E
709
A
02
UniProt
VAR_069498
E
709
G
EGFR_HUMAN
Unclassified
---
A
E
709
G
03
UniProt
VAR_026085
E
709
K
EGFR_HUMAN
Unclassified
---
A
E
709
K
04
UniProt
VAR_026086
G
719
A
EGFR_HUMAN
Unclassified
---
A
G
719
A
05
UniProt
VAR_026087
G
719
C
EGFR_HUMAN
Polymorphism
28929495
A
G
719
C
06
UniProt
VAR_026088
G
719
D
EGFR_HUMAN
Unclassified
---
A
G
719
D
07
UniProt
VAR_019297
G
719
S
EGFR_HUMAN
Unclassified
---
A
G
719
S
08
UniProt
VAR_026089
G
724
S
EGFR_HUMAN
Unclassified
---
A
G
724
S
09
UniProt
VAR_026090
E
734
K
EGFR_HUMAN
Unclassified
---
A
E
734
K
10
UniProt
VAR_026093
L
747
F
EGFR_HUMAN
Unclassified
---
A
L
747
F
11
UniProt
VAR_026095
R
748
P
EGFR_HUMAN
Unclassified
---
A
R
748
P
12
UniProt
VAR_069502
S
768
I
EGFR_HUMAN
Polymorphism
121913465
A
S
768
I
13
UniProt
VAR_069503
V
769
M
EGFR_HUMAN
Polymorphism
147149347
A
V
769
M
14
UniProt
VAR_026097
Q
787
R
EGFR_HUMAN
Unclassified
---
A
Q
787
R
15
UniProt
VAR_026098
T
790
M
EGFR_HUMAN
Unclassified
---
A
M
790
M
16
UniProt
VAR_026099
L
833
V
EGFR_HUMAN
Unclassified
---
A
L
833
V
17
UniProt
VAR_026100
V
834
L
EGFR_HUMAN
Unclassified
---
A
V
834
L
18
UniProt
VAR_069504
H
835
L
EGFR_HUMAN
Unclassified
---
A
H
835
L
19
UniProt
VAR_069505
L
838
V
EGFR_HUMAN
Unclassified
---
A
L
838
V
20
UniProt
VAR_026101
L
858
M
EGFR_HUMAN
Unclassified
---
A
L
858
M
21
UniProt
VAR_019298
L
858
R
EGFR_HUMAN
Polymorphism
121434568
A
L
858
R
22
UniProt
VAR_026102
L
861
Q
EGFR_HUMAN
Polymorphism
121913444
A
L
861
Q
23
UniProt
VAR_026103
G
873
E
EGFR_HUMAN
Unclassified
---
A
G
873
E
24
UniProt
VAR_019299
R
962
G
EGFR_HUMAN
Polymorphism
17337451
A
R
962
G
25
UniProt
VAR_019300
H
988
P
EGFR_HUMAN
Polymorphism
17290699
A
H
988
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:718-745)
2: PROTEIN_KINASE_TYR (A:833-845)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
EGFR_HUMAN
718-745
1
A:718-745
-
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
EGFR_HUMAN
833-845
1
A:833-845
-
[
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]
Exons
(0, 0)
Info
All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ikaa_ (A:)
1b: SCOP_d3ikab_ (B:)
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Classes
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)
(
)
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(
)
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(
)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
EGF receptor tyrosine kinase, Erbb-1
(36)
Human (Homo sapiens) [TaxId: 9606]
(36)
1a
d3ikaa_
A:
1b
d3ikab_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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(currently selected atoms:
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Asym.Unit (109 KB)
Header - Asym.Unit
Biol.Unit 1 (54 KB)
Header - Biol.Unit 1
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