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3IK5
Asym. Unit
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Asym.Unit (52 KB)
Biol.Unit 1 (48 KB)
Biol.Unit 2 (26 KB)
Biol.Unit 3 (24 KB)
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(1)
Title
:
SIVMAC239 NEF IN COMPLEX WITH TCR ZETA ITAM 1 POLYPEPTIDE (A63-R80)
Authors
:
W. M. Kim, A. B. Sigalov, L. J. Stern
Date
:
05 Aug 09 (Deposition) - 02 Feb 10 (Release) - 28 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Keywords
:
Protein-Protein Complex, Cell Membrane, Lipoprotein, Membrane, Myristate, Viral Immunoevasion, Virulence, Disulfide Bond, Host- Virus Interaction, Phosphoprotein, Receptor, Transmembrane, Viral Protein-Antiviral Protein Complex, Viral Protein-Signaling Protein Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
W. M. Kim, A. B. Sigalov, L. J. Stern
Pseudo-Merohedral Twinning And Noncrystallographic Symmetry In Orthorhombic Crystals Of Sivmac239 Nef Core Domain Bound To Different-Length Tcrzeta Fragments.
Acta Crystallogr. , Sect. D V. 66 163 2010
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Hetero Components
(0, 0)
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Sites
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SAPs(SNPs)/Variants
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Exons
(2, 4)
Info
All Exons
Exon 1.3c (B:63-73 | D:63-73)
Exon 1.4 (B:74-78 | D:74-77)
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All Exon Boundaries
1: Boundary 1.2a/1.3c
2: Boundary 1.3c/1.4
3: Boundary 1.4/1.5a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000362089
1b
ENSE00001897306
chr1:
167487775-167487645
131
CD3Z_HUMAN
1-20
20
0
-
-
1.2a
ENST00000362089
2a
ENSE00001164461
chr1:
167410004-167409901
104
CD3Z_HUMAN
20-54
35
0
-
-
1.3c
ENST00000362089
3c
ENSE00000958523
chr1:
167408637-167408581
57
CD3Z_HUMAN
55-73
19
2
B:63-73
D:63-73
11
11
1.4
ENST00000362089
4
ENSE00000958524
chr1:
167407887-167407807
81
CD3Z_HUMAN
74-100
27
2
B:74-78
D:74-77
5
4
1.5a
ENST00000362089
5a
ENSE00001067430
chr1:
167404671-167404636
36
CD3Z_HUMAN
101-112
12
0
-
-
1.5d
ENST00000362089
5d
ENSE00000958526
chr1:
167403313-167403257
57
CD3Z_HUMAN
113-131
19
0
-
-
1.6
ENST00000362089
6
ENSE00000958527
chr1:
167402296-167402261
36
CD3Z_HUMAN
132-143
12
0
-
-
1.7d
ENST00000362089
7d
ENSE00001924110
chr1:
167400983-167399877
1107
CD3Z_HUMAN
144-164
21
0
-
-
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SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d3ik5a_ (A:)
1b: SCOP_d3ik5c_ (C:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Regulatory factor Nef
(10)
Superfamily
:
Regulatory factor Nef
(10)
Family
:
automated matches
(2)
Protein domain
:
automated matches
(2)
Simian immunodeficiency virus [TaxId: 388909]
(1)
1a
d3ik5a_
A:
1b
d3ik5c_
C:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3ik5C00 (C:100-234)
1b: CATH_3ik5A00 (A:100-234)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nef Regulatory Factor
(6)
Homologous Superfamily
:
Nef Regulatory Factor
(6)
Siv-cpz (Simian immunodeficiency virus)
(1)
1a
3ik5C00
C:100-234
1b
3ik5A00
A:100-234
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Pfam Domains
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Asym.Unit (52 KB)
Header - Asym.Unit
Biol.Unit 1 (48 KB)
Header - Biol.Unit 1
Biol.Unit 2 (26 KB)
Header - Biol.Unit 2
Biol.Unit 3 (24 KB)
Header - Biol.Unit 3
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