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3IJR
Asym. Unit
Info
Asym.Unit (400 KB)
Biol.Unit 1 (196 KB)
Biol.Unit 2 (193 KB)
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(1)
Title
:
2.05 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF A SHORT CHAIN DEHYDROGENASE FROM BACILLUS ANTHRACIS STR. 'AMES ANCESTOR' IN COMPLEX WITH NAD+
Authors
:
A. S. Halavaty, G. Minasov, T. Skarina, O. Onopriyenko, E. Gordon, K. Kw A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date
:
04 Aug 09 (Deposition) - 08 Sep 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Short Chain Dehydrogenase, Structural Genomics, Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Oxidoreductase, Csgid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. S. Halavaty, G. Minasov, T. Skarina, O. Onopriyenko, E. Gordon, K. Kwon, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 05 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'Ames Ancestor' In Complex With Nad+
To Be Published
[
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Hetero Components
(4, 64)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
3b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
3c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
3d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
3e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
3f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
3g: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADg)
3h: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADh)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
8
Ligand/Ion
MAGNESIUM ION
2
MSE
34
Mod. Amino Acid
SELENOMETHIONINE
3
NAD
8
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4
SO4
14
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:53 , SER A:54 , GLY A:55 , ILE A:56 , TYR A:75 , LEU A:76 , GLU A:78 , GLY A:101 , ASP A:102 , LEU A:103 , ASN A:129 , VAL A:130 , ALA A:131 , GLN A:132 , ILE A:153 , TYR A:158 , THR A:178 , ALA A:179 , SER A:180 , TYR A:193 , LYS A:197 , PRO A:223 , GLY A:224 , PRO A:225 , ILE A:226 , THR A:228 , PRO A:229 , LEU A:230 , ILE A:231 , PHE A:243 , HOH A:291 , MG A:300 , HOH A:318 , HOH A:428 , HOH A:816
BINDING SITE FOR RESIDUE NAD A 301
02
AC2
SOFTWARE
ASP A:53 , SER A:54 , GLU A:78 , NAD A:301 , HOH A:428 , HOH A:918
BINDING SITE FOR RESIDUE MG A 300
03
AC3
SOFTWARE
LYS A:110 , LYS A:163 , HOH A:679 , HOH A:801 , HOH A:804
BINDING SITE FOR RESIDUE SO4 A 317
04
AC4
SOFTWARE
SER A:122 , ASN A:124 , LYS A:170 , HOH A:321 , HOH A:396 , HOH A:808
BINDING SITE FOR RESIDUE SO4 A 323
05
AC5
SOFTWARE
PRO B:19 , GLY B:51 , ASP B:53 , SER B:54 , GLY B:55 , ILE B:56 , TYR B:75 , LEU B:76 , GLU B:78 , GLY B:101 , ASP B:102 , LEU B:103 , ASN B:129 , VAL B:130 , ALA B:131 , GLN B:132 , ILE B:153 , THR B:178 , ALA B:179 , SER B:180 , TYR B:193 , LYS B:197 , PRO B:223 , GLY B:224 , PRO B:225 , ILE B:226 , THR B:228 , PRO B:229 , LEU B:230 , ILE B:231 , PHE B:243 , MG B:300 , HOH B:319 , HOH B:795
BINDING SITE FOR RESIDUE NAD B 301
06
AC6
SOFTWARE
ASP B:53 , SER B:54 , GLU B:78 , NAD B:301 , HOH B:795 , HOH B:796
BINDING SITE FOR RESIDUE MG B 300
07
AC7
SOFTWARE
LYS B:110 , LYS B:163 , HOH B:841 , HOH B:851 , HOH B:858 , HOH B:922 , HOH C:936
BINDING SITE FOR RESIDUE SO4 B 318
08
AC8
SOFTWARE
ASP C:53 , SER C:54 , GLY C:55 , ILE C:56 , TYR C:75 , LEU C:76 , GLU C:78 , GLY C:101 , ASP C:102 , LEU C:103 , ASN C:129 , VAL C:130 , ALA C:131 , GLN C:132 , ILE C:153 , TYR C:158 , THR C:178 , ALA C:179 , SER C:180 , TYR C:193 , LYS C:197 , PRO C:223 , GLY C:224 , PRO C:225 , ILE C:226 , THR C:228 , PRO C:229 , LEU C:230 , ILE C:231 , PHE C:243 , MG C:300 , HOH C:302 , HOH C:380 , HOH C:473
BINDING SITE FOR RESIDUE NAD C 301
09
AC9
SOFTWARE
ASP C:53 , SER C:54 , GLU C:78 , NAD C:301 , HOH C:380 , HOH C:697
BINDING SITE FOR RESIDUE MG C 300
10
BC1
SOFTWARE
GLU C:106 , LYS C:110 , LYS C:163 , HOH C:313
BINDING SITE FOR RESIDUE SO4 C 320
11
BC2
SOFTWARE
SER C:122 , ASN C:124 , HOH C:342 , HOH C:365
BINDING SITE FOR RESIDUE SO4 C 321
12
BC3
SOFTWARE
LYS C:170 , GLN C:171 , HOH C:940
BINDING SITE FOR RESIDUE SO4 C 327
13
BC4
SOFTWARE
GLY C:172 , ARG C:217 , SER C:267 , SER C:268 , SER C:271 , HOH C:350 , HOH C:900 , HOH C:913
BINDING SITE FOR RESIDUE SO4 C 328
14
BC5
SOFTWARE
PRO D:19 , ASP D:53 , SER D:54 , GLY D:55 , ILE D:56 , TYR D:75 , LEU D:76 , GLU D:78 , GLY D:101 , ASP D:102 , LEU D:103 , ASN D:129 , VAL D:130 , ALA D:131 , GLN D:132 , ILE D:153 , THR D:178 , ALA D:179 , SER D:180 , TYR D:193 , LYS D:197 , PRO D:223 , GLY D:224 , PRO D:225 , ILE D:226 , THR D:228 , PRO D:229 , LEU D:230 , ILE D:231 , PHE D:243 , MG D:300 , HOH D:307 , HOH D:476 , HOH D:487 , HOH D:849
BINDING SITE FOR RESIDUE NAD D 301
15
BC6
SOFTWARE
ASP D:53 , SER D:54 , GLU D:78 , NAD D:301 , HOH D:738 , HOH D:849
BINDING SITE FOR RESIDUE MG D 300
16
BC7
SOFTWARE
THR A:143 , HOH A:845 , LYS D:110 , LYS D:163
BINDING SITE FOR RESIDUE SO4 D 324
17
BC8
SOFTWARE
ASP E:53 , SER E:54 , GLY E:55 , ILE E:56 , TYR E:75 , LEU E:76 , GLU E:78 , GLY E:101 , ASP E:102 , LEU E:103 , ASN E:129 , VAL E:130 , ALA E:131 , GLN E:132 , ILE E:153 , TYR E:158 , THR E:178 , ALA E:179 , SER E:180 , TYR E:193 , LYS E:197 , PRO E:223 , GLY E:224 , ILE E:226 , THR E:228 , PRO E:229 , LEU E:230 , ILE E:231 , PHE E:243 , MG E:300 , HOH E:502 , HOH E:552 , HOH E:645
BINDING SITE FOR RESIDUE NAD E 301
18
BC9
SOFTWARE
ASP E:53 , SER E:54 , GLU E:78 , NAD E:301 , HOH E:645 , HOH E:815
BINDING SITE FOR RESIDUE MG E 300
19
CC1
SOFTWARE
GLU E:106 , LYS E:110 , LYS E:163 , HOH E:784 , THR H:143
BINDING SITE FOR RESIDUE SO4 E 319
20
CC2
SOFTWARE
PRO F:19 , ASP F:53 , SER F:54 , GLY F:55 , ILE F:56 , TYR F:75 , LEU F:76 , GLU F:78 , GLY F:101 , ASP F:102 , LEU F:103 , ASN F:129 , VAL F:130 , ALA F:131 , GLN F:132 , ILE F:153 , TYR F:158 , THR F:178 , ALA F:179 , SER F:180 , TYR F:193 , LYS F:197 , PRO F:223 , GLY F:224 , PRO F:225 , ILE F:226 , THR F:228 , PRO F:229 , LEU F:230 , ILE F:231 , PHE F:243 , MG F:300 , HOH F:305 , HOH F:752
BINDING SITE FOR RESIDUE NAD F 301
21
CC3
SOFTWARE
ASP F:53 , SER F:54 , GLU F:78 , NAD F:301 , HOH F:751 , HOH F:752
BINDING SITE FOR RESIDUE MG F 300
22
CC4
SOFTWARE
SER F:122 , ASN F:124 , LYS F:170
BINDING SITE FOR RESIDUE SO4 F 322
23
CC5
SOFTWARE
LYS F:110 , LYS F:163 , HOH F:560 , HOH F:701 , THR G:143
BINDING SITE FOR RESIDUE SO4 F 326
24
CC6
SOFTWARE
PRO G:19 , ASP G:53 , SER G:54 , GLY G:55 , ILE G:56 , TYR G:75 , LEU G:76 , GLU G:78 , GLY G:101 , ASP G:102 , LEU G:103 , ASN G:129 , VAL G:130 , ALA G:131 , GLN G:132 , ILE G:153 , TYR G:158 , THR G:178 , ALA G:179 , SER G:180 , TYR G:193 , LYS G:197 , PRO G:223 , GLY G:224 , PRO G:225 , ILE G:226 , THR G:228 , PRO G:229 , LEU G:230 , ILE G:231 , PHE G:243 , MG G:300 , HOH G:384 , HOH G:522 , HOH G:600
BINDING SITE FOR RESIDUE NAD G 301
25
CC7
SOFTWARE
ASP G:53 , SER G:54 , GLU G:78 , NAD G:301 , HOH G:480 , HOH G:522
BINDING SITE FOR RESIDUE MG G 300
26
CC8
SOFTWARE
THR F:143 , LYS G:110 , LYS G:163 , HOH G:814
BINDING SITE FOR RESIDUE SO4 G 329
27
CC9
SOFTWARE
GLY G:172 , VAL G:174 , ARG G:217 , SER G:267 , SER G:268 , SER G:271 , HOH G:617 , HOH G:937
BINDING SITE FOR RESIDUE SO4 G 330
28
DC1
SOFTWARE
ASP H:53 , SER H:54 , GLY H:55 , ILE H:56 , TYR H:75 , LEU H:76 , GLU H:78 , GLY H:101 , ASP H:102 , LEU H:103 , ASN H:129 , VAL H:130 , ALA H:131 , GLN H:132 , ILE H:153 , TYR H:158 , THR H:178 , ALA H:179 , SER H:180 , TYR H:193 , LYS H:197 , PRO H:223 , GLY H:224 , PRO H:225 , ILE H:226 , THR H:228 , PRO H:229 , LEU H:230 , ILE H:231 , PHE H:243 , MG H:300 , HOH H:479 , HOH H:492 , HOH H:527 , HOH H:605 , HOH H:634
BINDING SITE FOR RESIDUE NAD H 301
29
DC2
SOFTWARE
ASP H:53 , SER H:54 , GLU H:78 , NAD H:301 , HOH H:474 , HOH H:527
BINDING SITE FOR RESIDUE MG H 300
30
DC3
SOFTWARE
GLU H:106 , LYS H:110 , LYS H:163 , HOH H:416 , HOH H:776
BINDING SITE FOR RESIDUE SO4 H 325
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3ijra_ (A:)
1b: SCOP_d3ijre_ (E:)
1c: SCOP_d3ijrf_ (F:)
1d: SCOP_d3ijrg_ (G:)
1e: SCOP_d3ijrh_ (H:)
1f: SCOP_d3ijrb_ (B:)
1g: SCOP_d3ijrc_ (C:)
1h: SCOP_d3ijrd_ (D:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Bacillus anthracis [TaxId: 261594]
(4)
1a
d3ijra_
A:
1b
d3ijre_
E:
1c
d3ijrf_
F:
1d
d3ijrg_
G:
1e
d3ijrh_
H:
1f
d3ijrb_
B:
1g
d3ijrc_
C:
1h
d3ijrd_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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