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Asym. Unit
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Asym.Unit (131 KB)
Biol.Unit 1 (125 KB)
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(1)
Title
:
TERNARY COMPLEX OF MACROPHAGE MIGRATION INHIBITORY FACTOR (MIF) BOUND BOTH TO 4-HYDROXYPHENYLPYRUVATE AND TO THE ALLOSTERIC INHIBITOR AV1013 (R-STEREOISOMER)
Authors
:
G. V. Crichlow, Y. Cho, E. J. Lolis
Date
:
04 Aug 09 (Deposition) - 16 Jun 10 (Release) - 30 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.25
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Allosteric Inhibition, Cytokine, Immune Response, Inflammatory Response, Innate Immunity, Isomerase, Phosphoprotein, Secreted
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Cho, G. V. Crichlow, J. J. Vermeire, L. Leng, X. Du, M. E. Hodsdon, R. Bucala, M. Cappello, M. Gross, F. Gaeta, K. Johnson, E. J. Lolis
Allosteric Inhibition Of Macrophage Migration Inhibitory Factor Revealed By Ibudilast.
Proc. Natl. Acad. Sci. Usa V. 107 11313 2010
[
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: (2R)-2-AMINO-1-[2-(1-METHYLETHYL)P... (AVRa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
3a: (2E)-2-HYDROXY-3-(4-HYDROXYPHENYL)... (EN1a)
3b: (2E)-2-HYDROXY-3-(4-HYDROXYPHENYL)... (EN1b)
3c: (2E)-2-HYDROXY-3-(4-HYDROXYPHENYL)... (EN1c)
4a: 3-(4-HYDROXY-PHENYL)PYRUVIC ACID (ENOa)
4b: 3-(4-HYDROXY-PHENYL)PYRUVIC ACID (ENOb)
4c: 3-(4-HYDROXY-PHENYL)PYRUVIC ACID (ENOc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AVR
1
Ligand/Ion
(2R)-2-AMINO-1-[2-(1-METHYLETHYL)PYRAZOLO[1,5-A]PYRIDIN-3-YL]PROPAN-1-ONE
2
CL
8
Ligand/Ion
CHLORIDE ION
3
EN1
3
Ligand/Ion
(2E)-2-HYDROXY-3-(4-HYDROXYPHENYL)PROP-2-ENOIC ACID
4
ENO
3
Ligand/Ion
3-(4-HYDROXY-PHENYL)PYRUVIC ACID
[
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]
Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:1 , MET A:2 , LYS A:32 , TYR A:36 , HIS A:62 , ILE A:64 , VAL A:106 , GLN C:24 , TYR C:95 , ASN C:97
BINDING SITE FOR RESIDUE EN1 A 900
02
AC2
SOFTWARE
PRO A:1 , MET A:2 , LYS A:32 , HIS A:62 , SER A:63 , ILE A:64 , MET A:101 , HOH A:516 , GLN C:24 , ASN C:97
BINDING SITE FOR RESIDUE ENO A 901
03
AC3
SOFTWARE
GLN A:24 , TYR A:95 , ASN A:97 , PRO B:1 , MET B:2 , LYS B:32 , TYR B:36 , HIS B:62 , ILE B:64 , MET B:101 , VAL B:106 , PHE B:113
BINDING SITE FOR RESIDUE EN1 B 900
04
AC4
SOFTWARE
GLN A:24 , TYR A:95 , ASN A:97 , PRO B:1 , MET B:2 , LYS B:32 , HIS B:62 , SER B:63 , ILE B:64 , MET B:101 , PHE B:113 , HOH B:604
BINDING SITE FOR RESIDUE ENO B 901
05
AC5
SOFTWARE
TYR B:95 , ASN B:97 , PRO C:1 , MET C:2 , LYS C:32 , TYR C:36 , HIS C:62 , SER C:63 , ILE C:64 , MET C:101
BINDING SITE FOR RESIDUE EN1 C 900
06
AC6
SOFTWARE
GLU A:54 , TYR B:95 , ASN B:97 , PRO C:1 , MET C:2 , LYS C:32 , TYR C:36 , HIS C:62 , SER C:63 , ILE C:64 , MET C:101 , PHE C:113 , HOH C:673
BINDING SITE FOR RESIDUE ENO C 901
07
AC7
SOFTWARE
SER A:90 , TYR B:95 , GLN C:35 , TYR C:36 , TRP C:108 , PHE C:113 , HOH C:605
BINDING SITE FOR RESIDUE AVR C 200
08
AC8
SOFTWARE
GLY A:68 , GLY A:69 , ALA A:70 , GLN A:71 , HOH A:648
BINDING SITE FOR RESIDUE CL A 801
09
AC9
SOFTWARE
GLY B:68 , GLY B:69 , ALA B:70 , GLN B:71 , HOH B:598
BINDING SITE FOR RESIDUE CL B 802
10
BC1
SOFTWARE
GLY C:68 , GLY C:69 , ALA C:70 , GLN C:71
BINDING SITE FOR RESIDUE CL C 803
11
BC2
SOFTWARE
HOH A:204 , ASN B:102 , ASN B:105
BINDING SITE FOR RESIDUE CL B 804
12
BC3
SOFTWARE
ASN A:102 , ASN A:105 , HOH C:215
BINDING SITE FOR RESIDUE CL A 805
13
BC4
SOFTWARE
HOH B:218 , ASN C:102 , ASN C:105
BINDING SITE FOR RESIDUE CL C 806
14
BC5
SOFTWARE
ARG A:73
BINDING SITE FOR RESIDUE CL A 807
15
BC6
SOFTWARE
ARG C:73
BINDING SITE FOR RESIDUE CL C 808
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: MIF (A:54-68,B:54-68,C:54-68)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MIF
PS01158
Macrophage migration inhibitory factor family signature.
MIF_HUMAN
55-69
3
A:54-68
B:54-68
C:54-68
[
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Exons
(3, 9)
Info
All Exons
Exon 1.1a (A:1-35 | B:1-35 | C:1-35)
Exon 1.2b (A:36-93 | B:36-93 | C:36-93)
Exon 1.2d (A:93-114 | B:93-114 | C:93-114)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2b
3: Boundary 1.2b/1.2d
4: Boundary 1.2d/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000215754
1a
ENSE00001922200
chr22:
24236191-24236769
579
MIF_HUMAN
1-36
36
3
A:1-35
B:1-35
C:1-35
35
35
35
1.2b
ENST00000215754
2b
ENSE00000651496
chr22:
24236959-24237131
173
MIF_HUMAN
37-94
58
3
A:36-93
B:36-93
C:36-93
58
58
58
1.2d
ENST00000215754
2d
ENSE00001839840
chr22:
24237227-24237413
187
MIF_HUMAN
94-115
22
3
A:93-114
B:93-114
C:93-114
22
22
22
[
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d3ijja_ (A:)
1b: SCOP_d3ijjb_ (B:)
1c: SCOP_d3ijjc_ (C:)
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(
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)
(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Tautomerase/MIF
(104)
Superfamily
:
Tautomerase/MIF
(104)
Family
:
MIF-related
(58)
Protein domain
:
Microphage migration inhibition factor (MIF)
(55)
Human (Homo sapiens) [TaxId: 9606]
(46)
1a
d3ijja_
A:
1b
d3ijjb_
B:
1c
d3ijjc_
C:
[
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3ijjA00 (A:1-114)
1b: CATH_3ijjB00 (B:1-114)
1c: CATH_3ijjC00 (C:1-114)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Macrophage Migration Inhibitory Factor
(40)
Homologous Superfamily
:
Macrophage Migration Inhibitory Factor
(40)
Human (Homo sapiens)
(25)
1a
3ijjA00
A:1-114
1b
3ijjB00
B:1-114
1c
3ijjC00
C:1-114
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein & NOT PROSITE
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Chain C
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