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3IIZ
Asym. Unit
Info
Asym.Unit (145 KB)
Biol.Unit 1 (138 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE FEFE-HYDROGENASE MATURASE HYDE FROM T. MARITIMA IN COMPLEX WITH S-ADENOSYL-L-METHIONINE
Authors
:
Y. Nicolet, P. Amara, J. M. Mouesca, J. C. Fontecilla-Camps
Date
:
03 Aug 09 (Deposition) - 22 Sep 09 (Release) - 22 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.62
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Adomet Radical, Sam Radical, Hyde, Hydrogenase, Fe4S4 Cluster, Adomet Cleavage, Maturation, Adenosylmethionine, Adomet Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Nicolet, P. Amara, J. -M. Mouesca, J. C. Fontecilla-Camps
Unexpected Electron Transfer Mechanism Upon Adomet Cleavage In Radical Sam Proteins
Proc. Natl. Acad. Sci. Usa 2009
(for further references see the
PDB file header
)
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Hetero Components
(9, 15)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: CARBONATE ION (CO3a)
3a: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSa)
3b: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSb)
3c: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSc)
3d: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSd)
3e: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSe)
4a: S-HYDROXYCYSTEINE (CSOa)
5a: FE2/S2 (INORGANIC) CLUSTER (FESa)
6a: HYDROSULFURIC ACID (H2Sa)
6b: HYDROSULFURIC ACID (H2Sb)
7a: 2-AMINO-3-(4-HYDROXY-6-OXOCYCLOHEX... (OTYa)
8a: S-ADENOSYLMETHIONINE (SAMa)
9a: IRON/SULFUR CLUSTER (SF4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
CO3
1
Ligand/Ion
CARBONATE ION
3
CPS
5
Ligand/Ion
3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
4
CSO
1
Mod. Amino Acid
S-HYDROXYCYSTEINE
5
FES
1
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
6
H2S
2
Ligand/Ion
HYDROSULFURIC ACID
7
OTY
1
Mod. Amino Acid
2-AMINO-3-(4-HYDROXY-6-OXOCYCLOHEXA-1,4-DIENYL)PROPANOIC ACID
8
SAM
1
Ligand/Ion
S-ADENOSYLMETHIONINE
9
SF4
1
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:63 , CYS A:67 , CYS A:70 , SAM A:1501
BINDING SITE FOR RESIDUE SF4 A 2460
02
AC2
SOFTWARE
TYR A:69 , SER A:108 , SER A:136 , GLY A:138 , ARG A:159 , GLU A:161 , ARG A:180 , MET A:199 , PRO A:229 , ILE A:231 , TYR A:303 , LEU A:305 , TYR A:306 , HOH A:458 , HOH A:464 , HOH A:466 , HOH A:475 , HOH A:514 , HOH A:780 , SF4 A:2460
BINDING SITE FOR RESIDUE SAM A 1501
03
AC3
SOFTWARE
GLN A:98 , PHE A:99 , GLY A:100 , LYS A:102 , GLU A:280 , ARG A:284 , MET A:324 , LYS A:325 , LEU A:329 , LEU A:330 , HOH A:455 , HOH A:491 , HOH A:517 , HOH A:541 , HOH A:553 , HOH A:672 , HOH A:754 , HOH A:777 , CPS A:1703 , CPS A:1704 , CPS A:1705
BINDING SITE FOR RESIDUE CPS A 1701
04
AC4
SOFTWARE
LYS A:37 , ASP A:40 , LYS A:170 , ARG A:284 , SER A:297 , LYS A:315 , ASP A:316 , THR A:317 , HOH A:353 , HOH A:382 , HOH A:414 , HOH A:545 , HOH A:595 , HOH A:623 , HOH A:648 , HOH A:762
BINDING SITE FOR RESIDUE CPS A 1702
05
AC5
SOFTWARE
ARG A:29 , GLU A:33 , THR A:247 , LEU A:250 , HOH A:540 , HOH A:544 , HOH A:550 , HOH A:739 , HOH A:782 , CPS A:1701 , CPS A:1704
BINDING SITE FOR RESIDUE CPS A 1703
06
AC6
SOFTWARE
ARG A:29 , LYS A:315 , THR A:317 , ALA A:318 , HOH A:376 , HOH A:406 , HOH A:418 , HOH A:440 , HOH A:579 , HOH A:675 , CPS A:1701 , CPS A:1703
BINDING SITE FOR RESIDUE CPS A 1704
07
AC7
SOFTWARE
LYS A:128 , MET A:324 , LYS A:325 , GLU A:328 , HOH A:656 , HOH A:690 , HOH A:723 , HOH A:724 , CPS A:1701
BINDING SITE FOR RESIDUE CPS A 1705
08
AC8
SOFTWARE
ARG A:279 , CYS A:311 , CYS A:319 , CYS A:322 , VAL A:323 , HOH A:569 , H2S A:2649 , H2S A:2650
BINDING SITE FOR RESIDUE FES A 2648
09
AC9
SOFTWARE
CYS A:311 , CYS A:319 , FES A:2648
BINDING SITE FOR RESIDUE H2S A 2649
10
BC1
SOFTWARE
ARG A:279 , CYS A:322 , MET A:326 , FES A:2648
BINDING SITE FOR RESIDUE H2S A 2650
11
BC2
SOFTWARE
ARG A:54 , THR A:134 , ARG A:155
BINDING SITE FOR RESIDUE CL A 349
12
BC3
SOFTWARE
ARG A:159 , THR A:269 , ALA A:270 , TYR A:306 , HOH A:435 , HOH A:710
BINDING SITE FOR RESIDUE CL A 350
13
BC4
SOFTWARE
PHE A:246 , HOH A:499 , HOH A:530
BINDING SITE FOR RESIDUE CO3 A 351
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Chain A
Asymmetric Unit 1
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Asym.Unit (145 KB)
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