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3IIX
Asym. Unit
Info
Asym.Unit (149 KB)
Biol.Unit 1 (142 KB)
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(1)
Title
:
X-RAY STRUCTURE OF THE FEFE-HYDROGENASE MATURASE HYDE FROM T. MARITIMA IN COMPLEX WITH METHIONINE AND 5'DEOXYADENOSINE
Authors
:
Y. Nicolet, P. Amara, J. M. Mouesca, J. C. Fontecilla-Camps
Date
:
03 Aug 09 (Deposition) - 22 Sep 09 (Release) - 22 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.25
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Adomet Radical, Sam Radical, Adomet Cleavage, Fe4S4 Cluster, Hyde, Hydrogenase, Maturation, Beta Barrel, Deoxyadenosine, Adomet Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Nicolet, P. Amara, J. -M. Mouesca, J. C. Fontecilla-Camps
Unexpected Electron Transfer Mechanism Upon Adomet Cleavage In Radical Sam Proteins
Proc. Natl. Acad. Sci. Usa 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(9, 19)
Info
All Hetero Components
1a: 5'-DEOXYADENOSINE (5ADa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: CARBONATE ION (CO3a)
4a: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSa)
4b: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSb)
4c: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSc)
4d: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSd)
4e: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSe)
5a: S-HYDROXYCYSTEINE (CSOa)
5b: S-HYDROXYCYSTEINE (CSOb)
6a: HYDROSULFURIC ACID (H2Sa)
6b: HYDROSULFURIC ACID (H2Sb)
6c: HYDROSULFURIC ACID (H2Sc)
6d: HYDROSULFURIC ACID (H2Sd)
7a: METHIONINE (METa)
8a: 2-AMINO-3-(4-HYDROXY-6-OXOCYCLOHEX... (OTYa)
9a: IRON/SULFUR CLUSTER (SF4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5AD
1
Ligand/Ion
5'-DEOXYADENOSINE
2
CL
3
Ligand/Ion
CHLORIDE ION
3
CO3
1
Ligand/Ion
CARBONATE ION
4
CPS
5
Ligand/Ion
3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
5
CSO
2
Mod. Amino Acid
S-HYDROXYCYSTEINE
6
H2S
4
Ligand/Ion
HYDROSULFURIC ACID
7
MET
1
Mod. Amino Acid
METHIONINE
8
OTY
1
Mod. Amino Acid
2-AMINO-3-(4-HYDROXY-6-OXOCYCLOHEXA-1,4-DIENYL)PROPANOIC ACID
9
SF4
1
Ligand/Ion
IRON/SULFUR CLUSTER
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:63 , CYS A:67 , CYS A:70 , GLY A:109 , MET A:1401
BINDING SITE FOR RESIDUE SF4 A 2460
02
AC2
SOFTWARE
SER A:108 , SER A:136 , GLY A:138 , ARG A:180 , TYR A:303 , HOH A:472 , HOH A:478 , HOH A:481 , HOH A:491 , 5AD A:1501 , SF4 A:2460
BINDING SITE FOR RESIDUE MET A 1401
03
AC3
SOFTWARE
TYR A:69 , GLN A:107 , ARG A:159 , GLU A:161 , MET A:199 , PRO A:229 , ILE A:231 , LEU A:305 , TYR A:306 , HOH A:478 , HOH A:499 , HOH A:585 , MET A:1401
BINDING SITE FOR RESIDUE 5AD A 1501
04
AC4
SOFTWARE
GLN A:98 , PHE A:99 , GLY A:100 , PRO A:276 , GLY A:277 , GLU A:280 , ARG A:284 , MET A:324 , LEU A:330 , HOH A:390 , HOH A:419 , HOH A:475 , HOH A:502 , HOH A:510 , HOH A:511 , HOH A:661 , HOH A:692 , CPS A:1704 , CPS A:1705
BINDING SITE FOR RESIDUE CPS A 1701
05
AC5
SOFTWARE
LYS A:37 , ASP A:40 , LYS A:170 , ARG A:284 , SER A:297 , LYS A:315 , ASP A:316 , THR A:317 , HOH A:360 , HOH A:541 , HOH A:575 , HOH A:662 , HOH A:719 , HOH A:721 , HOH A:790
BINDING SITE FOR RESIDUE CPS A 1702
06
AC6
SOFTWARE
ARG A:29 , GLU A:33 , THR A:247 , LEU A:250 , CO3 A:352 , HOH A:401 , HOH A:564 , HOH A:568 , HOH A:581 , HOH A:807 , CPS A:1704
BINDING SITE FOR RESIDUE CPS A 1703
07
AC7
SOFTWARE
THR A:317 , ALA A:318 , HOH A:447 , HOH A:464 , HOH A:581 , HOH A:729 , HOH A:733 , HOH A:757 , CPS A:1701 , CPS A:1703
BINDING SITE FOR RESIDUE CPS A 1704
08
AC8
SOFTWARE
LYS A:128 , MET A:324 , LYS A:325 , GLU A:328 , HOH A:359 , HOH A:455 , HOH A:610 , HOH A:692 , HOH A:703 , HOH A:802 , CPS A:1701
BINDING SITE FOR RESIDUE CPS A 1705
09
AC9
SOFTWARE
CYS A:319 , H2S A:1802 , H2S A:1803
BINDING SITE FOR RESIDUE H2S A 1801
10
BC1
SOFTWARE
CYS A:311 , CYS A:319 , HOH A:536 , H2S A:1801 , H2S A:1803
BINDING SITE FOR RESIDUE H2S A 1802
11
BC2
SOFTWARE
ARG A:279 , CYS A:319 , CSO A:322 , H2S A:1801 , H2S A:1802
BINDING SITE FOR RESIDUE H2S A 1803
12
BC3
SOFTWARE
THR A:269 , LYS A:309 , CYS A:311
BINDING SITE FOR RESIDUE H2S A 1804
13
BC4
SOFTWARE
THR A:268 , ALA A:270 , TYR A:306 , HOH A:570 , HOH A:585
BINDING SITE FOR RESIDUE CL A 349
14
BC5
SOFTWARE
ARG A:54 , THR A:134 , ARG A:155
BINDING SITE FOR RESIDUE CL A 350
15
BC6
SOFTWARE
ARG A:159 , PRO A:266 , MET A:291 , HOH A:542 , HOH A:712 , HOH A:750
BINDING SITE FOR RESIDUE CL A 351
16
BC7
SOFTWARE
PHE A:246 , HOH A:458 , HOH A:527 , HOH A:685 , CPS A:1703
BINDING SITE FOR RESIDUE CO3 A 352
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (149 KB)
Header - Asym.Unit
Biol.Unit 1 (142 KB)
Header - Biol.Unit 1
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