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3II9
Asym. Unit
Info
Asym.Unit (268 KB)
Biol.Unit 1 (256 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLUTARYL-COA DEHYDROGENASE FROM BURKHOLDERIA PSEUDOMALLEI AT 1.73 ANGSTROM
Authors
:
R. F. Ismagilov, L. Li, W. B. Du, B. Staker, Accelerated Technologies For Gene To 3D Structure (Atcg3D), Seattle Structural Genomi For Infectious Disease (Ssgcid)
Date
:
31 Jul 09 (Deposition) - 15 Dec 09 (Release) - 10 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.74
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Slipchip, Microfluidics, Screening, Optimization, Protein Crystallization, Structural Genomics, Psi-2, Protein Structure Initiative, Accelerated Technologies Center For Gene To 3D Structure, Atcg3D, Fad, Flavoprotein, Oxidoreductase, Seattle Structural Genomics Center For Infectious Disease, Ssgcid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Li, W. Du, R. Ismagilov
User-Loaded Slipchip For Equipment-Free Multiplexed Nanoliter-Scale Experiments.
J. Am. Chem. Soc. V. 132 106 2010
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Hetero Components
(5, 18)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
4a: TETRAETHYLENE GLYCOL (PG4a)
4b: TETRAETHYLENE GLYCOL (PG4b)
4c: TETRAETHYLENE GLYCOL (PG4c)
5a: TRIETHYLENE GLYCOL (PGEa)
5b: TRIETHYLENE GLYCOL (PGEb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
5
Ligand/Ion
GLYCEROL
2
MG
4
Ligand/Ion
MAGNESIUM ION
3
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
PG4
3
Ligand/Ion
TETRAETHYLENE GLYCOL
5
PGE
2
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:214 , HOH A:433 , PHE C:45 , ALA C:361 , ARG C:362
BINDING SITE FOR RESIDUE PEG A 396
02
AC2
SOFTWARE
HOH A:450 , HOH A:463 , HOH A:472 , HOH A:480 , HOH A:492 , HOH A:509
BINDING SITE FOR RESIDUE MG A 397
03
AC3
SOFTWARE
LYS A:36 , ARG A:40
BINDING SITE FOR RESIDUE PGE A 398
04
AC4
SOFTWARE
PHE B:6 , TRP B:8 , ASP B:9 , ARG B:273 , HOH B:1101 , PRO C:158 , GLY C:159
BINDING SITE FOR RESIDUE PG4 B 396
05
AC5
SOFTWARE
ARG B:97 , SER B:98 , PHE B:136 , LEU B:138 , THR B:139 , VAL B:370 , HOH B:408
BINDING SITE FOR RESIDUE PG4 B 397
06
AC6
SOFTWARE
ALA B:19 , ARG B:315
BINDING SITE FOR RESIDUE GOL B 398
07
AC7
SOFTWARE
GLY C:35 , LYS C:36 , ARG C:40 , HOH C:991
BINDING SITE FOR RESIDUE PGE C 396
08
AC8
SOFTWARE
GLU C:121 , LYS C:122 , PRO C:125 , LYS C:126
BINDING SITE FOR RESIDUE PEG C 397
09
AC9
SOFTWARE
LEU C:205 , HOH C:519 , HOH C:1007 , HOH C:1036 , HOH C:1123
BINDING SITE FOR RESIDUE MG C 398
10
BC1
SOFTWARE
SER C:98 , TYR C:373
BINDING SITE FOR RESIDUE GOL C 399
11
BC2
SOFTWARE
HOH C:963 , HOH C:964
BINDING SITE FOR RESIDUE MG C 400
12
BC3
SOFTWARE
HIS C:7 , TRP C:8 , ASP C:9 , ARG C:273 , GLN D:388 , THR D:389
BINDING SITE FOR RESIDUE PG4 C 401
13
BC4
SOFTWARE
LYS D:36 , ARG D:40
BINDING SITE FOR RESIDUE GOL D 396
14
BC5
SOFTWARE
ALA C:387 , GLN C:388 , ARG D:273 , LEU D:277 , PEG D:399
BINDING SITE FOR RESIDUE PEG D 398
15
BC6
SOFTWARE
VAL D:151 , SER D:164
BINDING SITE FOR RESIDUE GOL D 397
16
BC7
SOFTWARE
TRP D:8 , ASP D:9 , PEG D:398
BINDING SITE FOR RESIDUE PEG D 399
17
BC8
SOFTWARE
HOH D:459
BINDING SITE FOR RESIDUE MG D 400
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3ii9a2 (A:243-395)
1b: SCOP_d3ii9b2 (B:243-395)
1c: SCOP_d3ii9c2 (C:243-395)
1d: SCOP_d3ii9d2 (D:243-395)
2a: SCOP_d3ii9a1 (A:3-242)
2b: SCOP_d3ii9b1 (B:4-242)
2c: SCOP_d3ii9c1 (C:4-242)
2d: SCOP_d3ii9d1 (D:3-242)
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Protein Domains
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Organisms
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Acyl-CoA dehydrogenase C-terminal domain-like
(61)
Family
:
automated matches
(29)
Protein domain
:
automated matches
(29)
Burkholderia pseudomallei [TaxId: 320372]
(6)
1a
d3ii9a2
A:243-395
1b
d3ii9b2
B:243-395
1c
d3ii9c2
C:243-395
1d
d3ii9d2
D:243-395
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Superfamily
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Burkholderia pseudomallei [TaxId: 320372]
(6)
2a
d3ii9a1
A:3-242
2b
d3ii9b1
B:4-242
2c
d3ii9c1
C:4-242
2d
d3ii9d1
D:3-242
[
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (268 KB)
Header - Asym.Unit
Biol.Unit 1 (256 KB)
Header - Biol.Unit 1
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