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3IGS
Asym. Unit
Info
Asym.Unit (98 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (47 KB)
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(1)
Title
:
STRUCTURE OF THE SALMONELLA ENTERICA N-ACETYLMANNOSAMINE-6-PHOSPHATE 2-EPIMERASE
Authors
:
S. M. Anderson, Z. Wawrzak, E. Gordon, T. Skarina, L. Papazisi, W. F. And A. Savchenko, Center For Structural Genomics Of Infectious Di (Csgid)
Date
:
28 Jul 09 (Deposition) - 04 Aug 09 (Release) - 14 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Salmonella, Energy Metabolism, Sugars, Csgid, Carbohydrate Metabolism, Isomerase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
[
close entry info
]
Hetero Components
(4, 27)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE (16Ga)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
16G
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE
2
CL
2
Ligand/Ion
CHLORIDE ION
3
MSE
10
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
14
Ligand/Ion
SULFATE ION
[
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]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:74 , ARG A:83 , MSE A:154 , TYR A:157 , SER A:208 , ARG A:212 , SO4 A:233 , SO4 A:234 , CL A:238 , HOH A:253 , HOH A:286 , HOH A:331 , HOH A:337 , HOH A:395 , HOH A:504 , HOH A:731 , HOH A:875 , HOH A:878
BINDING SITE FOR RESIDUE 16G A 230
02
AC2
SOFTWARE
MSE A:154 , GLY A:156 , TYR A:157 , THR A:158 , THR A:159 , HOH A:257 , HOH A:315 , HOH A:460 , HOH A:668 , HOH A:842
BINDING SITE FOR RESIDUE SO4 A 231
03
AC3
SOFTWARE
SER A:135 , HOH A:299 , HOH A:303 , HOH A:315 , HOH A:336 , HOH A:638 , HOH A:712
BINDING SITE FOR RESIDUE SO4 A 232
04
AC4
SOFTWARE
ARG B:83 , MSE B:154 , HOH B:278 , HOH B:411 , HOH B:806
BINDING SITE FOR RESIDUE SO4 B 230
05
AC5
SOFTWARE
LYS A:74 , ARG A:83 , ARG A:144 , ARG A:212 , 16G A:230 , HOH A:254 , HOH A:773 , HOH A:814
BINDING SITE FOR RESIDUE SO4 A 233
06
AC6
SOFTWARE
GLY A:185 , ARG A:186 , GLY A:207 , SER A:208 , 16G A:230 , HOH A:244 , HOH A:394 , HOH A:395 , HOH A:415 , HOH A:487 , HOH A:875
BINDING SITE FOR RESIDUE SO4 A 234
07
AC7
SOFTWARE
GLY B:185 , ARG B:186 , GLY B:207 , SER B:208 , HOH B:245 , HOH B:454 , HOH B:538 , HOH B:594 , HOH B:600 , HOH B:853
BINDING SITE FOR RESIDUE SO4 B 231
08
AC8
SOFTWARE
LYS B:74 , ARG B:83 , ARG B:212
BINDING SITE FOR RESIDUE SO4 B 232
09
AC9
SOFTWARE
ARG B:62 , GLY B:98 , HOH B:391 , HOH B:416 , HOH B:617 , HOH B:726
BINDING SITE FOR RESIDUE SO4 B 233
10
BC1
SOFTWARE
HIS B:215 , TRP B:219 , HOH B:445 , HOH B:560 , HOH B:563 , HOH B:851
BINDING SITE FOR RESIDUE SO4 B 234
11
BC2
SOFTWARE
ARG A:75 , ASP A:76 , HOH A:401 , HOH A:686 , HOH A:795
BINDING SITE FOR RESIDUE SO4 A 235
12
BC3
SOFTWARE
SER B:155 , GLY B:156 , TYR B:157 , THR B:158 , THR B:159 , HOH B:305 , HOH B:383 , HOH B:838
BINDING SITE FOR RESIDUE SO4 B 235
13
BC4
SOFTWARE
ARG A:75 , HOH A:587 , HOH A:835
BINDING SITE FOR RESIDUE SO4 A 236
14
BC5
SOFTWARE
ARG B:121 , HIS B:124 , HOH B:270 , HOH B:873
BINDING SITE FOR RESIDUE SO4 B 236
15
BC6
SOFTWARE
ARG A:121 , HOH A:250 , HOH A:291 , HOH A:323 , HOH A:417
BINDING SITE FOR RESIDUE SO4 A 237
16
BC7
SOFTWARE
GLN A:22 , ARG A:51 , ILE A:72 , LYS A:74 , 16G A:230 , HOH A:367
BINDING SITE FOR RESIDUE CL A 238
17
BC8
SOFTWARE
GLN B:22 , ARG B:51 , LYS B:74 , HOH B:344
BINDING SITE FOR RESIDUE CL B 237
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3igsa_ (A:)
1b: SCOP_d3igsb_ (B:)
View:
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Ribulose-phoshate binding barrel
(356)
Family
:
automated matches
(38)
Protein domain
:
automated matches
(38)
Salmonella typhimurium [TaxId: 90371]
(2)
1a
d3igsa_
A:
1b
d3igsb_
B:
[
close SCOP info
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3igsB00 (B:-2-229)
1b: CATH_3igsA00 (A:0-229)
View:
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Enterica serovar typhimurium (Salmonella enterica subsp)
(3)
1a
3igsB00
B:-2-229
1b
3igsA00
A:0-229
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Chain A
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Asymmetric Unit 1
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Miscellaneous
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Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (98 KB)
Header - Asym.Unit
Biol.Unit 1 (49 KB)
Header - Biol.Unit 1
Biol.Unit 2 (47 KB)
Header - Biol.Unit 2
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