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3IFV
Asym. Unit
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Asym.Unit (118 KB)
Biol.Unit 1 (112 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HALOFERAX VOLCANII PROLIFERATING CELL NUCLEAR ANTIGEN
Authors
:
J. A. Winter, P. Christofi, S. Morroll, K. A. Bunting
Date
:
26 Jul 09 (Deposition) - 01 Sep 09 (Release) - 09 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Processivity Factor, Sliding Clamp, Halophilic, Replication
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. A. Winter, P. Christofi, S. Morroll, K. A. Bunting
The Crystal Structure Of Haloferax Volcanii Proliferating Cell Nuclear Antigen Reveals Unique Surface Charge Characteristics Due To Halophilic Adaptation
Bmc Struct. Biol. V. 9 55 2009
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Hetero Components
(1, 9)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
1c: SODIUM ION (NAc)
1d: SODIUM ION (NAd)
1e: SODIUM ION (NAe)
1f: SODIUM ION (NAf)
1g: SODIUM ION (NAg)
1h: SODIUM ION (NAh)
1i: SODIUM ION (NAi)
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No.
Name
Count
Type
Full Name
1
NA
9
Ligand/Ion
SODIUM ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:150 , HOH A:264 , HOH A:294 , HOH A:321 , HOH A:324 , HOH A:325
BINDING SITE FOR RESIDUE NA A 401
2
AC2
SOFTWARE
ASP A:146 , SER A:149 , ASP A:150 , HOH A:257 , HOH A:294
BINDING SITE FOR RESIDUE NA A 402
3
AC3
SOFTWARE
LEU A:127 , HOH A:258 , HOH A:261 , HOH A:304
BINDING SITE FOR RESIDUE NA A 403
4
AC4
SOFTWARE
ASP B:150 , HOH B:248 , HOH B:249 , HOH B:253 , HOH B:265 , HOH B:269 , NA B:405
BINDING SITE FOR RESIDUE NA B 404
5
AC5
SOFTWARE
ASP B:146 , SER B:149 , ASP B:150 , HOH B:253 , HOH B:291 , NA B:404
BINDING SITE FOR RESIDUE NA B 405
6
AC6
SOFTWARE
LEU B:127 , HOH B:259 , HOH B:260
BINDING SITE FOR RESIDUE NA B 406
7
AC7
SOFTWARE
ASP C:150 , HOH C:252 , HOH C:266 , HOH C:286 , HOH C:287 , HOH C:357
BINDING SITE FOR RESIDUE NA C 407
8
AC8
SOFTWARE
ASP C:146 , SER C:149 , ASP C:150 , HOH C:286
BINDING SITE FOR RESIDUE NA C 408
9
AC9
SOFTWARE
LEU C:127 , HOH C:256 , HOH C:257 , HOH C:282 , HOH C:325
BINDING SITE FOR RESIDUE NA C 409
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3ifva1 (A:2-112)
1b: SCOP_d3ifva2 (A:113-243)
1c: SCOP_d3ifvb1 (B:2-112)
1d: SCOP_d3ifvb2 (B:113-243)
1e: SCOP_d3ifvc1 (C:2-112)
1f: SCOP_d3ifvc2 (C:113-243)
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Protein Domains
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(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNA clamp
(88)
Superfamily
:
DNA clamp
(88)
Family
:
DNA polymerase processivity factor
(40)
Protein domain
:
Proliferating cell nuclear antigen (PCNA)
(24)
Haloferax volcanii [TaxId: 2246]
(1)
1a
d3ifva1
A:2-112
1b
d3ifva2
A:113-243
1c
d3ifvb1
B:2-112
1d
d3ifvb2
B:113-243
1e
d3ifvc1
C:2-112
1f
d3ifvc2
C:113-243
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3ifvC00 (C:2-243)
1b: CATH_3ifvB00 (B:2-243)
1c: CATH_3ifvA00 (A:2-243)
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Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Box
(41)
Topology
:
Proliferating Cell Nuclear Antigen
(41)
Homologous Superfamily
:
[code=3.70.10.10, no name defined]
(41)
Haloferax volcanii (Haloferax volcanii)
(1)
1a
3ifvC00
C:2-243
1b
3ifvB00
B:2-243
1c
3ifvA00
A:2-243
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (118 KB)
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