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3IFA
Asym. Unit
Info
Asym.Unit (443 KB)
Biol.Unit 1 (434 KB)
Biol.Unit 2 (426 KB)
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(1)
Title
:
HUMAN MUSCLE FRUCTOSE-1,6-BISPHOSPHATASE E69Q MUTANT IN COMPLEX WITH AMP
Authors
:
R. Kolodziejczyk, M. Zarzycki, M. Jaskolski, A. Dzugaj
Date
:
24 Jul 09 (Deposition) - 11 Aug 10 (Release) - 13 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.93
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (2x)
Biol. Unit 2: C,D (2x)
Keywords
:
Gluconeogenesis, Glyconeogenesis, Muscle Fructose-1, 6-Bisphosphatase, Protein Engineering, Calcium Inhibition, Allosteric Enzyme, Carbohydrate Metabolism, Hydrolase, Magnesium, Metal-Binding, Phosphoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Zarzycki, R. Kolodziejczyk, E. Maciaszczyk-Dziubinska, R. Wysocki, M. Jaskolski, A. Dzugaj
Structure Of E69Q Mutant Of Human Muscle Fructose-1, 6-Bisphosphatase
Acta Crystallogr. , Sect. D V. 67 1028 2011
[
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Hetero Components
(3, 23)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
1c: ADENOSINE MONOPHOSPHATE (AMPc)
1d: ADENOSINE MONOPHOSPHATE (AMPd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
4
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
GOL
6
Ligand/Ion
GLYCEROL
3
SO4
13
Ligand/Ion
SULFATE ION
[
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:17 , LYS A:20 , GLY A:21 , ALA A:24 , THR A:27 , GLY A:28 , GLU A:29 , LEU A:30 , THR A:31 , LYS A:112 , TYR A:113 , ARG A:140 , THR A:177 , HOH A:363 , HOH A:390 , HOH A:415 , HOH A:515 , HOH A:538
BINDING SITE FOR RESIDUE AMP A 339
02
AC2
SOFTWARE
VAL B:17 , LYS B:20 , GLY B:21 , ALA B:24 , GLY B:26 , THR B:27 , GLY B:28 , GLU B:29 , LEU B:30 , THR B:31 , LYS B:112 , TYR B:113 , THR B:177 , HOH B:344 , HOH B:345 , HOH B:417 , HOH B:423 , HOH B:424 , HOH B:447
BINDING SITE FOR RESIDUE AMP B 339
03
AC3
SOFTWARE
VAL C:17 , LYS C:20 , GLY C:21 , ALA C:24 , GLY C:26 , THR C:27 , GLY C:28 , GLU C:29 , LEU C:30 , THR C:31 , LYS C:112 , TYR C:113 , VAL C:160 , THR C:177 , HOH C:373 , HOH C:405 , HOH C:462 , HOH C:568 , HOH C:569 , HOH C:587
BINDING SITE FOR RESIDUE AMP C 339
04
AC4
SOFTWARE
VAL D:17 , LYS D:20 , GLY D:21 , ALA D:24 , GLY D:26 , THR D:27 , GLY D:28 , GLU D:29 , LEU D:30 , THR D:31 , LYS D:112 , TYR D:113 , ARG D:140 , THR D:177 , HOH D:357 , HOH D:358 , HOH D:375 , HOH D:521
BINDING SITE FOR RESIDUE AMP D 339
05
AC5
SOFTWARE
ASN A:212 , TYR A:215 , ARG A:243 , TYR A:244 , TYR A:264 , LYS A:274 , HOH A:397 , HOH A:549
BINDING SITE FOR RESIDUE SO4 A 340
06
AC6
SOFTWARE
LYS A:274 , ARG A:276 , ARG A:313 , HOH A:452
BINDING SITE FOR RESIDUE SO4 A 341
07
AC7
SOFTWARE
GLY A:122 , SER A:123 , SER A:124
BINDING SITE FOR RESIDUE SO4 A 342
08
AC8
SOFTWARE
LYS A:207 , SER A:237 , ALA A:238 , HOH A:431
BINDING SITE FOR RESIDUE SO4 A 343
09
AC9
SOFTWARE
ASN B:212 , TYR B:215 , ARG B:243 , TYR B:244 , TYR B:264 , LYS B:274 , HOH B:362
BINDING SITE FOR RESIDUE SO4 B 340
10
BC1
SOFTWARE
GLY B:122 , SER B:123 , SER B:124
BINDING SITE FOR RESIDUE SO4 B 341
11
BC2
SOFTWARE
LYS B:274 , ARG B:276 , ARG B:313 , HOH B:405
BINDING SITE FOR RESIDUE SO4 B 342
12
BC3
SOFTWARE
ASP C:121 , GLY C:122 , SER C:123 , SER C:124
BINDING SITE FOR RESIDUE SO4 C 340
13
BC4
SOFTWARE
ASN C:212 , TYR C:215 , ARG C:243 , TYR C:244 , TYR C:264 , HOH C:571
BINDING SITE FOR RESIDUE SO4 C 341
14
BC5
SOFTWARE
LYS C:274 , ARG C:276 , ARG C:313
BINDING SITE FOR RESIDUE SO4 C 342
15
BC6
SOFTWARE
ASN D:212 , TYR D:215 , ARG D:243 , TYR D:244 , TYR D:264 , LYS D:274 , HOH D:364
BINDING SITE FOR RESIDUE SO4 D 340
16
BC7
SOFTWARE
LYS D:274 , ARG D:276 , ARG D:313 , HOH D:371
BINDING SITE FOR RESIDUE SO4 D 341
17
BC8
SOFTWARE
ASP D:121 , GLY D:122 , SER D:123 , SER D:124
BINDING SITE FOR RESIDUE SO4 D 342
18
BC9
SOFTWARE
ASN A:99 , LYS A:100 , ASP A:101 , HOH A:641
BINDING SITE FOR RESIDUE GOL A 344
19
CC1
SOFTWARE
LYS A:217 , TYR A:218 , LYS A:269 , HOH A:430 , HOH A:445
BINDING SITE FOR RESIDUE GOL A 345
20
CC2
SOFTWARE
LYS A:203 , LYS A:204 , LYS A:205 , HOH A:401
BINDING SITE FOR RESIDUE GOL A 346
21
CC3
SOFTWARE
ASN B:99 , LYS B:100 , ASP B:101
BINDING SITE FOR RESIDUE GOL B 343
22
CC4
SOFTWARE
ASN C:99 , LYS C:100 , ASP C:101 , HOH C:431
BINDING SITE FOR RESIDUE GOL C 343
23
CC5
SOFTWARE
GLU D:98 , ASN D:99 , LYS D:100 , ASP D:101 , GLU D:146
BINDING SITE FOR RESIDUE GOL D 343
[
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_024448 (L85L, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024448
V
86
L
F16P2_HUMAN
Polymorphism
573212
A/B/C/D
L
85
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: FBPASE (A:273-285,B:273-285,C:273-285,D:27...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FBPASE
PS00124
Fructose-1-6-bisphosphatase active site.
F16P2_HUMAN
274-286
4
A:273-285
B:273-285
C:273-285
D:273-285
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3ifaa_ (A:)
1b: SCOP_d3ifab_ (B:)
1c: SCOP_d3ifac_ (C:)
1d: SCOP_d3ifad_ (D:)
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Protein Domains
(
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Organisms
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(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Carbohydrate phosphatase
(140)
Superfamily
:
Carbohydrate phosphatase
(140)
Family
:
Inositol monophosphatase/fructose-1,6-bisphosphatase-like
(121)
Protein domain
:
automated matches
(20)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d3ifaa_
A:
1b
d3ifab_
B:
1c
d3ifac_
C:
1d
d3ifad_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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