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3IEM
Biol. Unit 3
Info
Asym.Unit (302 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (78 KB)
Biol.Unit 3 (76 KB)
Biol.Unit 4 (77 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TTHA0252 FROM THERMUS THERMOPHILUS HB8 COMPLEXED WITH RNA ANALOG
Authors
:
H. Ishikawa, N. Nakagawa, S. Kuramitus, S. Yokoyama, R. Masui
Date
:
23 Jul 09 (Deposition) - 28 Jul 10 (Release) - 28 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,G,J,L,N (1x)
Biol. Unit 2: B,H,K (1x)
Biol. Unit 3: C,O,P (1x)
Biol. Unit 4: D,I,M (1x)
Keywords
:
Metallo Beta Lactamase Fold, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing, Hydrolase-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of Ttha0252 From Thermus Thermophilus Hb8 Complexed With Rna Analog
To Be Published
[
close entry info
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2as: SULFATE ION (SO4as)
2at: SULFATE ION (SO4at)
2au: SULFATE ION (SO4au)
2av: SULFATE ION (SO4av)
2aw: SULFATE ION (SO4aw)
2ax: SULFATE ION (SO4ax)
2ay: SULFATE ION (SO4ay)
2az: SULFATE ION (SO4az)
2b: SULFATE ION (SO4b)
2ba: SULFATE ION (SO4ba)
2bb: SULFATE ION (SO4bb)
2bc: SULFATE ION (SO4bc)
2bd: SULFATE ION (SO4bd)
2be: SULFATE ION (SO4be)
2bf: SULFATE ION (SO4bf)
2bg: SULFATE ION (SO4bg)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
3a: URIDINE-5'-PHOSPHOROTHIOATE (SSUa)
3aa: URIDINE-5'-PHOSPHOROTHIOATE (SSUaa)
3ab: URIDINE-5'-PHOSPHOROTHIOATE (SSUab)
3ac: URIDINE-5'-PHOSPHOROTHIOATE (SSUac)
3ad: URIDINE-5'-PHOSPHOROTHIOATE (SSUad)
3ae: URIDINE-5'-PHOSPHOROTHIOATE (SSUae)
3af: URIDINE-5'-PHOSPHOROTHIOATE (SSUaf)
3ag: URIDINE-5'-PHOSPHOROTHIOATE (SSUag)
3ah: URIDINE-5'-PHOSPHOROTHIOATE (SSUah)
3ai: URIDINE-5'-PHOSPHOROTHIOATE (SSUai)
3b: URIDINE-5'-PHOSPHOROTHIOATE (SSUb)
3c: URIDINE-5'-PHOSPHOROTHIOATE (SSUc)
3d: URIDINE-5'-PHOSPHOROTHIOATE (SSUd)
3e: URIDINE-5'-PHOSPHOROTHIOATE (SSUe)
3f: URIDINE-5'-PHOSPHOROTHIOATE (SSUf)
3g: URIDINE-5'-PHOSPHOROTHIOATE (SSUg)
3h: URIDINE-5'-PHOSPHOROTHIOATE (SSUh)
3i: URIDINE-5'-PHOSPHOROTHIOATE (SSUi)
3j: URIDINE-5'-PHOSPHOROTHIOATE (SSUj)
3k: URIDINE-5'-PHOSPHOROTHIOATE (SSUk)
3l: URIDINE-5'-PHOSPHOROTHIOATE (SSUl)
3m: URIDINE-5'-PHOSPHOROTHIOATE (SSUm)
3n: URIDINE-5'-PHOSPHOROTHIOATE (SSUn)
3o: URIDINE-5'-PHOSPHOROTHIOATE (SSUo)
3p: URIDINE-5'-PHOSPHOROTHIOATE (SSUp)
3q: URIDINE-5'-PHOSPHOROTHIOATE (SSUq)
3r: URIDINE-5'-PHOSPHOROTHIOATE (SSUr)
3s: URIDINE-5'-PHOSPHOROTHIOATE (SSUs)
3t: URIDINE-5'-PHOSPHOROTHIOATE (SSUt)
3u: URIDINE-5'-PHOSPHOROTHIOATE (SSUu)
3v: URIDINE-5'-PHOSPHOROTHIOATE (SSUv)
3w: URIDINE-5'-PHOSPHOROTHIOATE (SSUw)
3x: URIDINE-5'-PHOSPHOROTHIOATE (SSUx)
3y: URIDINE-5'-PHOSPHOROTHIOATE (SSUy)
3z: URIDINE-5'-PHOSPHOROTHIOATE (SSUz)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FLC
-1
Ligand/Ion
CITRATE ANION
2
SO4
12
Ligand/Ion
SULFATE ION
3
SSU
4
Mod. Nucleotide
URIDINE-5'-PHOSPHOROTHIOATE
4
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: EC4 (SOFTWARE)
02: EC5 (SOFTWARE)
03: EC6 (SOFTWARE)
04: EC7 (SOFTWARE)
05: EC8 (SOFTWARE)
06: EC9 (SOFTWARE)
07: FC1 (SOFTWARE)
08: FC2 (SOFTWARE)
09: FC3 (SOFTWARE)
10: FC4 (SOFTWARE)
11: FC5 (SOFTWARE)
12: FC6 (SOFTWARE)
13: FC7 (SOFTWARE)
14: FC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
EC4
SOFTWARE
VAL C:291 , GLU C:292 , HIS C:293
BINDING SITE FOR RESIDUE SO4 C 432
02
EC5
SOFTWARE
ARG C:354
BINDING SITE FOR RESIDUE SO4 C 433
03
EC6
SOFTWARE
ARG C:24 , LEU C:129 , GLY C:130
BINDING SITE FOR RESIDUE SO4 C 434
04
EC7
SOFTWARE
ARG C:84 , LEU C:88 , ARG C:263 , ARG C:266
BINDING SITE FOR RESIDUE SO4 C 435
05
EC8
SOFTWARE
ARG C:155
BINDING SITE FOR RESIDUE SO4 C 436
06
EC9
SOFTWARE
ARG C:10 , ARG C:424
BINDING SITE FOR RESIDUE SO4 C 437
07
FC1
SOFTWARE
ARG A:73 , ARG C:424
BINDING SITE FOR RESIDUE SO4 C 438
08
FC2
SOFTWARE
LEU C:171 , PRO C:172 , ASP C:173 , SER C:269 , GLU C:270
BINDING SITE FOR RESIDUE SO4 C 439
09
FC3
SOFTWARE
GLU C:153 , HOH C:461
BINDING SITE FOR RESIDUE SO4 C 440
10
FC4
SOFTWARE
HIS C:42 , PRO C:104 , PHE C:105
BINDING SITE FOR RESIDUE SO4 C 441
11
FC5
SOFTWARE
TYR C:189 , ARG C:227 , GLY C:340 , TYR C:341 , SER C:378 , GLY C:379 , SSU P:1
BINDING SITE FOR RESIDUE SO4 C 442
12
FC6
SOFTWARE
ARG A:73 , ARG C:424
BINDING SITE FOR RESIDUE SO4 C 443
13
FC7
SOFTWARE
ASP C:63 , HIS C:64 , ASP C:162 , HIS C:400 , ZN C:445
BINDING SITE FOR RESIDUE ZN C 444
14
FC8
SOFTWARE
HIS C:59 , HIS C:61 , HIS C:141 , ASP C:162 , ZN C:444
BINDING SITE FOR RESIDUE ZN C 445
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3iema_ (A:)
1b: SCOP_d3iemc_ (C:)
1c: SCOP_d3iemd_ (D:)
1d: SCOP_d3iemb_ (B:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
beta-CASP RNA-metabolising hydrolases
(13)
Protein domain
:
Putative RNA-degradation protein TTHA0252
(9)
Thermus thermophilus [TaxId: 274]
(9)
1a
d3iema_
A:
1b
d3iemc_
C:
1c
d3iemd_
D:
1d
d3iemb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
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