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3IEM
Biol. Unit 2
Info
Asym.Unit (302 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (78 KB)
Biol.Unit 3 (76 KB)
Biol.Unit 4 (77 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TTHA0252 FROM THERMUS THERMOPHILUS HB8 COMPLEXED WITH RNA ANALOG
Authors
:
H. Ishikawa, N. Nakagawa, S. Kuramitus, S. Yokoyama, R. Masui
Date
:
23 Jul 09 (Deposition) - 28 Jul 10 (Release) - 28 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,G,J,L,N (1x)
Biol. Unit 2: B,H,K (1x)
Biol. Unit 3: C,O,P (1x)
Biol. Unit 4: D,I,M (1x)
Keywords
:
Metallo Beta Lactamase Fold, Endonuclease, Hydrolase, Metal-Binding, Nuclease, Rna-Binding, Rrna Processing, Hydrolase-Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ishikawa, N. Nakagawa, S. Kuramitsu, R. Masui
Crystal Structure Of Ttha0252 From Thermus Thermophilus Hb8 Complexed With Rna Analog
To Be Published
[
close entry info
]
Hetero Components
(3, 27)
Info
All Hetero Components
1a: CITRATE ANION (FLCa)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2as: SULFATE ION (SO4as)
2at: SULFATE ION (SO4at)
2au: SULFATE ION (SO4au)
2av: SULFATE ION (SO4av)
2aw: SULFATE ION (SO4aw)
2ax: SULFATE ION (SO4ax)
2ay: SULFATE ION (SO4ay)
2az: SULFATE ION (SO4az)
2b: SULFATE ION (SO4b)
2ba: SULFATE ION (SO4ba)
2bb: SULFATE ION (SO4bb)
2bc: SULFATE ION (SO4bc)
2bd: SULFATE ION (SO4bd)
2be: SULFATE ION (SO4be)
2bf: SULFATE ION (SO4bf)
2bg: SULFATE ION (SO4bg)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
3a: URIDINE-5'-PHOSPHOROTHIOATE (SSUa)
3aa: URIDINE-5'-PHOSPHOROTHIOATE (SSUaa)
3ab: URIDINE-5'-PHOSPHOROTHIOATE (SSUab)
3ac: URIDINE-5'-PHOSPHOROTHIOATE (SSUac)
3ad: URIDINE-5'-PHOSPHOROTHIOATE (SSUad)
3ae: URIDINE-5'-PHOSPHOROTHIOATE (SSUae)
3af: URIDINE-5'-PHOSPHOROTHIOATE (SSUaf)
3ag: URIDINE-5'-PHOSPHOROTHIOATE (SSUag)
3ah: URIDINE-5'-PHOSPHOROTHIOATE (SSUah)
3ai: URIDINE-5'-PHOSPHOROTHIOATE (SSUai)
3b: URIDINE-5'-PHOSPHOROTHIOATE (SSUb)
3c: URIDINE-5'-PHOSPHOROTHIOATE (SSUc)
3d: URIDINE-5'-PHOSPHOROTHIOATE (SSUd)
3e: URIDINE-5'-PHOSPHOROTHIOATE (SSUe)
3f: URIDINE-5'-PHOSPHOROTHIOATE (SSUf)
3g: URIDINE-5'-PHOSPHOROTHIOATE (SSUg)
3h: URIDINE-5'-PHOSPHOROTHIOATE (SSUh)
3i: URIDINE-5'-PHOSPHOROTHIOATE (SSUi)
3j: URIDINE-5'-PHOSPHOROTHIOATE (SSUj)
3k: URIDINE-5'-PHOSPHOROTHIOATE (SSUk)
3l: URIDINE-5'-PHOSPHOROTHIOATE (SSUl)
3m: URIDINE-5'-PHOSPHOROTHIOATE (SSUm)
3n: URIDINE-5'-PHOSPHOROTHIOATE (SSUn)
3o: URIDINE-5'-PHOSPHOROTHIOATE (SSUo)
3p: URIDINE-5'-PHOSPHOROTHIOATE (SSUp)
3q: URIDINE-5'-PHOSPHOROTHIOATE (SSUq)
3r: URIDINE-5'-PHOSPHOROTHIOATE (SSUr)
3s: URIDINE-5'-PHOSPHOROTHIOATE (SSUs)
3t: URIDINE-5'-PHOSPHOROTHIOATE (SSUt)
3u: URIDINE-5'-PHOSPHOROTHIOATE (SSUu)
3v: URIDINE-5'-PHOSPHOROTHIOATE (SSUv)
3w: URIDINE-5'-PHOSPHOROTHIOATE (SSUw)
3x: URIDINE-5'-PHOSPHOROTHIOATE (SSUx)
3y: URIDINE-5'-PHOSPHOROTHIOATE (SSUy)
3z: URIDINE-5'-PHOSPHOROTHIOATE (SSUz)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FLC
1
Ligand/Ion
CITRATE ANION
2
SO4
19
Ligand/Ion
SULFATE ION
3
SSU
7
Mod. Nucleotide
URIDINE-5'-PHOSPHOROTHIOATE
4
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: BC2 (SOFTWARE)
03: BC6 (SOFTWARE)
04: CC1 (SOFTWARE)
05: CC2 (SOFTWARE)
06: CC3 (SOFTWARE)
07: CC4 (SOFTWARE)
08: CC5 (SOFTWARE)
09: CC6 (SOFTWARE)
10: CC7 (SOFTWARE)
11: CC8 (SOFTWARE)
12: CC9 (SOFTWARE)
13: DC1 (SOFTWARE)
14: DC2 (SOFTWARE)
15: DC3 (SOFTWARE)
16: DC4 (SOFTWARE)
17: DC5 (SOFTWARE)
18: DC6 (SOFTWARE)
19: DC7 (SOFTWARE)
20: DC8 (SOFTWARE)
21: DC9 (SOFTWARE)
22: EC1 (SOFTWARE)
23: EC2 (SOFTWARE)
24: EC3 (SOFTWARE)
25: HC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:241 , HOH A:521 , SER B:330 , ASP B:331
BINDING SITE FOR RESIDUE SO4 A 432
02
BC2
SOFTWARE
ARG A:202 , HIS A:238 , HIS A:240 , ARG A:241 , PRO B:366 , ARG B:368
BINDING SITE FOR RESIDUE SO4 A 442
03
BC6
SOFTWARE
TYR A:248 , GLU A:289 , ALA A:296 , TYR B:248 , GLU B:289 , HOH B:496
BINDING SITE FOR RESIDUE SO4 A 446
04
CC1
SOFTWARE
PRO B:243 , ARG B:244
BINDING SITE FOR RESIDUE SO4 B 432
05
CC2
SOFTWARE
ARG B:24
BINDING SITE FOR RESIDUE SO4 B 433
06
CC3
SOFTWARE
ARG B:84 , ARG B:263
BINDING SITE FOR RESIDUE SO4 B 434
07
CC4
SOFTWARE
ARG B:354 , SO4 B:448
BINDING SITE FOR RESIDUE SO4 B 435
08
CC5
SOFTWARE
TYR B:189 , ARG B:227 , GLY B:340 , TYR B:341 , SER B:378 , GLY B:379 , SSU K:1
BINDING SITE FOR RESIDUE SO4 B 436
09
CC6
SOFTWARE
LEU B:387 , LEU B:412
BINDING SITE FOR RESIDUE SO4 B 437
10
CC7
SOFTWARE
ARG B:24 , LEU B:129 , GLY B:130
BINDING SITE FOR RESIDUE SO4 B 438
11
CC8
SOFTWARE
ARG B:195 , GLY B:375 , GLY B:376 , HOH B:500
BINDING SITE FOR RESIDUE SO4 B 439
12
CC9
SOFTWARE
HIS B:372 , THR B:373 , SO4 B:441
BINDING SITE FOR RESIDUE SO4 B 440
13
DC1
SOFTWARE
ILE B:352 , ARG B:354 , VAL B:371 , SO4 B:440 , SO4 B:448
BINDING SITE FOR RESIDUE SO4 B 441
14
DC2
SOFTWARE
PRO B:172 , ASP B:173 , SER B:269 , GLU B:270
BINDING SITE FOR RESIDUE SO4 B 442
15
DC3
SOFTWARE
SER B:370 , HIS B:372 , SO4 B:448
BINDING SITE FOR RESIDUE SO4 B 443
16
DC4
SOFTWARE
ARG B:320 , HOH B:517 , HOH K:524
BINDING SITE FOR RESIDUE SO4 B 444
17
DC5
SOFTWARE
HIS B:293 , THR B:294 , GLU B:295 , HOH B:517 , SSU L:2
BINDING SITE FOR RESIDUE SO4 B 445
18
DC6
SOFTWARE
ARG B:359 , LEU B:361 , HOH B:464
BINDING SITE FOR RESIDUE SO4 B 446
19
DC7
SOFTWARE
ARG A:244 , LYS B:298
BINDING SITE FOR RESIDUE SO4 B 447
20
DC8
SOFTWARE
ARG B:354 , ALA B:369 , SER B:370 , VAL B:371 , SO4 B:435 , SO4 B:441 , SO4 B:443
BINDING SITE FOR RESIDUE SO4 B 448
21
DC9
SOFTWARE
ARG A:244 , HIS B:323 , LYS B:326 , HIS B:327
BINDING SITE FOR RESIDUE SO4 B 449
22
EC1
SOFTWARE
LEU A:407 , GLY A:410 , LYS A:411 , LEU B:407 , GLY B:410 , LYS B:411
BINDING SITE FOR RESIDUE FLC B 450
23
EC2
SOFTWARE
ASP B:63 , HIS B:64 , ASP B:162 , HIS B:400 , ZN B:452 , SSU K:1
BINDING SITE FOR RESIDUE ZN B 451
24
EC3
SOFTWARE
HIS B:59 , HIS B:61 , HIS B:141 , ASP B:162 , ZN B:451 , SSU K:1
BINDING SITE FOR RESIDUE ZN B 452
25
HC4
SOFTWARE
SSU K:3 , HOH K:227 , HOH K:524
BINDING SITE FOR RESIDUE SO4 K 36
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3iema_ (A:)
1b: SCOP_d3iemc_ (C:)
1c: SCOP_d3iemd_ (D:)
1d: SCOP_d3iemb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-hydrolase/oxidoreductase
(184)
Superfamily
:
Metallo-hydrolase/oxidoreductase
(184)
Family
:
beta-CASP RNA-metabolising hydrolases
(13)
Protein domain
:
Putative RNA-degradation protein TTHA0252
(9)
Thermus thermophilus [TaxId: 274]
(9)
1a
d3iema_
A:
1b
d3iemc_
C:
1c
d3iemd_
D:
1d
d3iemb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
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Sorry, no Info available
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