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3IEB
Asym. Unit
Info
Asym.Unit (201 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (77 KB)
Biol.Unit 3 (77 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 3-KETO-L-GULONATE-6-PHOSPHATE DECARBOXYLASE FROM VIBRIO CHOLERAE O1 BIOVAR EL TOR STR. N16961
Authors
:
B. Nocek, N. Maltseva, J. Osipiuk, J. Stam, W. Anderson, A. Joachimiak
Date
:
22 Jul 09 (Deposition) - 18 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,E (1x)
Biol. Unit 3: D (2x)
Keywords
:
3-Keto-L-Gulonate-6-Phosphate Decarboxylase, Ulad, Csgid, Niaid, Structural Genomics, National Institute Of Allergy And Infectious Diseases (Niaid), Center For Structural Genomics Of Infectious Diseases, Biosynthetic Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Nocek, N. Maltseva, J. Osipiuk, J. Stam, W. Anderson, A. Joachimiak
Crystal Structure Of 3-Keto-L-Gulonate-6-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar El Tor Str. N16961
To Be Published
[
close entry info
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Hetero Components
(3, 57)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
10
Ligand/Ion
GLYCEROL
2
MSE
30
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
17
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:67 , GLY A:68 , GLY A:69 , ALA A:70 , THR A:94 , ALA A:97 , HOH A:223 , HOH A:544 , HOH A:547 , ARG B:139
BINDING SITE FOR RESIDUE SO4 A 1001
02
AC2
SOFTWARE
ALA A:88 , ALA A:90 , HIS A:91 , ILE A:92 , ILE A:95 , TRP A:125 , HOH A:625
BINDING SITE FOR RESIDUE GOL A 2001
03
AC3
SOFTWARE
ALA A:26 , ASN A:53 , HIS A:54 , PRO A:55 , ASN A:56 , HIS A:57
BINDING SITE FOR RESIDUE SO4 A 216
04
AC4
SOFTWARE
GLY A:170 , GLY A:171 , HOH A:633
BINDING SITE FOR RESIDUE SO4 A 217
05
AC5
SOFTWARE
HIS B:54 , PRO B:55 , ASN B:56 , HIS B:57
BINDING SITE FOR RESIDUE SO4 B 1002
06
AC6
SOFTWARE
GLN B:12 , THR B:13 , ARG B:192 , HOH B:373 , HOH B:634
BINDING SITE FOR RESIDUE GOL B 2001
07
AC7
SOFTWARE
ALA B:88 , ALA B:90 , HIS B:91 , ILE B:92 , ASP B:121 , TRP B:125
BINDING SITE FOR RESIDUE GOL B 2002
08
AC8
SOFTWARE
ILE B:113 , TRP B:117 , TYR B:135 , HIS B:136 , ARG B:137 , HOH B:472
BINDING SITE FOR RESIDUE GOL B 2003
09
AC9
SOFTWARE
ARG A:139 , ASP B:67 , GLY B:68 , GLY B:69 , ALA B:70 , THR B:94 , ALA B:97 , HOH B:649
BINDING SITE FOR RESIDUE SO4 B 216
10
BC1
SOFTWARE
GLY B:170 , GLY B:171 , ALA B:190 , GLY B:191 , HOH B:223
BINDING SITE FOR RESIDUE SO4 B 217
11
BC2
SOFTWARE
ALA C:88 , ALA C:90 , HIS C:91 , ILE C:92 , TRP C:125 , HOH C:287
BINDING SITE FOR RESIDUE GOL C 2001
12
BC3
SOFTWARE
ILE C:113 , TYR C:135 , HIS C:136 , SER C:138 , HOH C:246 , HOH C:482
BINDING SITE FOR RESIDUE GOL C 2002
13
BC4
SOFTWARE
HIS C:54 , PRO C:55 , ASN C:56 , HIS C:57 , HOH C:688 , HOH C:689
BINDING SITE FOR RESIDUE SO4 C 216
14
BC5
SOFTWARE
ASP C:67 , GLY C:68 , GLY C:69 , ALA C:70 , ALA C:93 , THR C:94 , ALA C:97 , HOH C:271 , HOH C:390 , HOH C:523 , ARG E:139
BINDING SITE FOR RESIDUE SO4 C 217
15
BC6
SOFTWARE
GLY C:170 , GLY C:171 , GLY C:191 , HOH C:228 , HOH C:303 , HOH C:467 , HOH C:681
BINDING SITE FOR RESIDUE SO4 C 218
16
BC7
SOFTWARE
ARG C:192 , HOH C:288
BINDING SITE FOR RESIDUE SO4 C 219
17
BC8
SOFTWARE
ARG D:51 , ASN D:56 , HIS D:57 , ASP D:82
BINDING SITE FOR RESIDUE GOL D 2001
18
BC9
SOFTWARE
ALA D:88 , ALA D:89 , ALA D:90 , ILE D:95 , TRP D:125 , HOH D:587 , HOH D:760
BINDING SITE FOR RESIDUE GOL D 2003
19
CC1
SOFTWARE
GLY D:191 , ARG D:192 , HOH D:301
BINDING SITE FOR RESIDUE SO4 D 216
20
CC2
SOFTWARE
ARG B:192 , HIS D:54 , PRO D:55 , ASN D:56 , HIS D:57 , HOH D:524 , HOH D:616
BINDING SITE FOR RESIDUE SO4 D 217
21
CC3
SOFTWARE
ASP D:67 , GLY D:68 , GLY D:69 , ALA D:70 , THR D:94 , ALA D:97 , ARG D:139 , HOH D:260 , HOH D:615
BINDING SITE FOR RESIDUE SO4 D 218
22
CC4
SOFTWARE
GLY D:170 , GLY D:171 , HOH D:286 , HOH D:540 , HOH D:541
BINDING SITE FOR RESIDUE SO4 D 219
23
CC5
SOFTWARE
ALA E:88 , ALA E:90 , HIS E:91 , ILE E:92 , ILE E:95 , ASP E:121 , TRP E:125 , HOH E:260
BINDING SITE FOR RESIDUE GOL E 2001
24
CC6
SOFTWARE
ILE E:113 , TRP E:117 , TYR E:135 , HIS E:136 , HOH E:229 , HOH E:282
BINDING SITE FOR RESIDUE GOL E 2002
25
CC7
SOFTWARE
ARG C:139 , ASP E:67 , GLY E:68 , GLY E:69 , ALA E:70 , THR E:94 , ALA E:97 , HOH E:233 , HOH E:488 , HOH E:617
BINDING SITE FOR RESIDUE SO4 E 216
26
CC8
SOFTWARE
ARG A:192 , ASN E:53 , HIS E:54 , PRO E:55 , ASN E:56 , HIS E:57
BINDING SITE FOR RESIDUE SO4 E 217
27
CC9
SOFTWARE
GLY E:170 , GLY E:171 , ALA E:190 , GLY E:191 , HOH E:423 , HOH E:442 , HOH E:458 , HOH E:608 , HOH E:721
BINDING SITE FOR RESIDUE SO4 E 218
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d3ieba_ (A:)
1b: SCOP_d3iebb_ (B:)
1c: SCOP_d3iebc_ (C:)
1d: SCOP_d3iebd_ (D:)
1e: SCOP_d3iebe_ (E:)
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(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Ribulose-phoshate binding barrel
(356)
Family
:
automated matches
(38)
Protein domain
:
automated matches
(38)
Vibrio cholerae [TaxId: 666]
(2)
1a
d3ieba_
A:
1b
d3iebb_
B:
1c
d3iebc_
C:
1d
d3iebd_
D:
1e
d3iebe_
E:
[
close SCOP info
]
CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_3iebB00 (B:2-215)
1b: CATH_3iebC00 (C:2-215)
1c: CATH_3iebE00 (E:2-215)
1d: CATH_3iebA00 (A:2-214)
1e: CATH_3iebD00 (D:3-215)
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Topologies
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Vibrio cholerae. Organism_taxid: 666. Strain: n16961.
(2)
1a
3iebB00
B:2-215
1b
3iebC00
C:2-215
1c
3iebE00
E:2-215
1d
3iebA00
A:2-214
1e
3iebD00
D:3-215
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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