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3IE5
Biol. Unit 1
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Asym.Unit (75 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (35 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HYP-1 PROTEIN FROM HYPERICUM PERFORATUM (ST JOHN'S WORT) INVOLVED IN HYPERICIN BIOSYNTHESIS
Authors
:
K. Michalska, H. Fernandes, M. M. Sikorski, M. Jaskolski
Date
:
22 Jul 09 (Deposition) - 10 Nov 09 (Release) - 02 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hypericin, St John'S Wort, Depression, Allergy, Pr-10 Protein, Cytokinin, Plant Hormones, Polyethylene Glycol, Peg, Pathogenesis-Related Protein, Plant Defense, Plant Protein, Biosynthetic Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
K. Michalska, H. Fernandes, M. M. Sikorski, M. Jaskolski
Crystal Structure Of Hyp-1, A St. John'S Wort Protein Implicated In The Biosynthesis Of Hypericin
J. Struct. Biol. V. 169 161 2010
(for further references see the
PDB file header
)
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
2a: CHLORIDE ION (CLa)
3a: 3,6,9,12,15,18,21-HEPTAOXATRICOSAN... (PE8a)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
5a: TETRAETHYLENE GLYCOL (PG4a)
5b: TETRAETHYLENE GLYCOL (PG4b)
5c: TETRAETHYLENE GLYCOL (PG4c)
5d: TETRAETHYLENE GLYCOL (PG4d)
5e: TETRAETHYLENE GLYCOL (PG4e)
6a: TRIETHYLENE GLYCOL (PGEa)
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No.
Name
Count
Type
Full Name
1
1PE
-1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
PE8
1
Ligand/Ion
3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL
4
PEG
-1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PG4
3
Ligand/Ion
TETRAETHYLENE GLYCOL
6
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:56 , VAL B:157 , PHE B:158 , HOH B:198
BINDING SITE FOR RESIDUE CL A 400
2
AC2
SOFTWARE
LYS A:8 , GLU A:10 , TYR A:141 , HOH A:252 , VAL B:7
BINDING SITE FOR RESIDUE PGE A 501
3
AC3
SOFTWARE
ARG A:27 , PHE A:39 , TYR A:120
BINDING SITE FOR RESIDUE PG4 A 502
4
AC4
SOFTWARE
GLN A:29 , LYS A:33 , ASP A:48 , TYR A:150 , HOH A:230
BINDING SITE FOR RESIDUE PE8 A 507
5
AC5
SOFTWARE
GLU A:46 , LYS A:71 , PHE A:87 , HOH A:242 , HOH A:249
BINDING SITE FOR RESIDUE PG4 A 508
6
AC6
SOFTWARE
LYS A:83 , GLU A:97 , LYS A:98 , HIS A:121 , HOH A:225
BINDING SITE FOR RESIDUE PG4 A 509
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SAPs(SNPs)/Variants
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Exons
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ie5a_ (A:)
1b: SCOP_d3ie5b_ (B:)
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Protein Domains
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
Bet v1-like
(158)
Family
:
automated matches
(39)
Protein domain
:
automated matches
(39)
Hypericum perforatum [TaxId: 65561]
(1)
1a
d3ie5a_
A:
1b
d3ie5b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3ie5B00 (B:-5-159)
1b: CATH_3ie5A00 (A:-1-159)
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Organisms
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)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4
(47)
Homologous Superfamily
:
[code=3.30.530.20, no name defined]
(47)
St (Hypericum perforatum)
(1)
1a
3ie5B00
B:-5-159
1b
3ie5A00
A:-1-159
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (75 KB)
Header - Asym.Unit
Biol.Unit 1 (34 KB)
Header - Biol.Unit 1
Biol.Unit 2 (35 KB)
Header - Biol.Unit 2
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