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3IDS
Asym. Unit
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Asym.Unit (250 KB)
Biol.Unit 1 (244 KB)
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(1)
Title
:
STRUCTURE OF GLYCOSOMAL GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE FROM TRYPANOSOMA CRUZI IN COMPLEX WITH THE IRREVERSIBLE IODOACETAMIDE INHIBITOR
Authors
:
T. L. Balliano, R. V. C. Guido, A. D. Andricopulo, G. Oliva
Date
:
21 Jul 09 (Deposition) - 11 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Irreversible Inhibitor, Protein-Ligand Complex, X-Ray, Glycolysis, Nad, Oxireductase, Glycosome, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. L. Balliano, R. V. C. Guido, A. D. Andricopulo, G. Oliva
Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Cruzi In Complex With The Irreversible Iodoacetamide Inhibitor
To Be Published
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: ACETAMIDE (ACMa)
1b: ACETAMIDE (ACMb)
1c: ACETAMIDE (ACMc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACM
3
Ligand/Ion
ACETAMIDE
2
GOL
6
Ligand/Ion
GLYCEROL
3
NAD
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER C:165 , CYS C:166 , ASN C:335 , TYR C:339 , HOH C:545 , HOH C:716
BINDING SITE FOR RESIDUE ACM C 360
02
AC2
SOFTWARE
LEU C:296 , ASP C:300 , ASP C:304 , HOH C:389 , HOH C:412 , HOH C:533
BINDING SITE FOR RESIDUE GOL C 361
03
AC3
SOFTWARE
GLY D:9 , GLY D:11 , ARG D:12 , ILE D:13 , VAL D:37 , ASP D:38 , MET D:39 , ALA D:90 , GLN D:91 , SER D:110 , THR D:111 , GLY D:112 , LEU D:113 , SER D:134 , ALA D:135 , CYS D:166 , ALA D:198 , ASN D:335 , TYR D:339 , HOH D:384 , HOH D:394 , HOH D:395 , HOH D:412 , HOH D:436 , HOH D:569 , HOH D:860 , HOH D:883
BINDING SITE FOR RESIDUE NAD D 360
04
AC4
SOFTWARE
TYR D:291 , THR D:292 , ASP D:293 , HOH D:397 , HOH D:490 , HOH D:1084
BINDING SITE FOR RESIDUE GOL D 361
05
AC5
SOFTWARE
VAL D:104 , GLY D:127 , ARG D:129 , HOH D:663 , HOH D:1164
BINDING SITE FOR RESIDUE GOL D 362
06
AC6
SOFTWARE
CYS A:166 , ASN A:335 , HOH A:432 , HOH A:511 , HOH A:512
BINDING SITE FOR RESIDUE ACM A 360
07
AC7
SOFTWARE
ASP A:300 , ASP A:304 , HOH A:459 , HOH A:462 , HOH A:499 , LYS C:58
BINDING SITE FOR RESIDUE GOL A 361
08
AC8
SOFTWARE
ASP A:24 , GLY A:25 , GLU A:30
BINDING SITE FOR RESIDUE GOL A 362
09
AC9
SOFTWARE
SER B:165 , CYS B:166 , ASN B:335 , HOH B:706 , HOH B:873
BINDING SITE FOR RESIDUE ACM B 360
10
BC1
SOFTWARE
TYR B:291 , THR B:292 , ASP B:293 , HOH B:424 , HOH B:467 , HOH B:587
BINDING SITE FOR RESIDUE GOL B 361
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GAPDH (A:164-171,B:164-171,C:164-171,D:16...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GAPDH
PS00071
Glyceraldehyde 3-phosphate dehydrogenase active site.
G3PG_TRYCR
164-171
4
A:164-171
B:164-171
C:164-171
D:164-171
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d3idsa2 (A:165-333)
1b: SCOP_d3idsb2 (B:165-333)
1c: SCOP_d3idsc2 (C:165-333)
1d: SCOP_d3idsd2 (D:165-333)
2a: SCOP_d3idsa1 (A:1-164,A:334-359)
2b: SCOP_d3idsb1 (B:1-164,B:334-359)
2c: SCOP_d3idsc1 (C:1-164,C:334-359)
2d: SCOP_d3idsd1 (D:1-164,D:334-359)
View:
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Classes
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)
(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
GAPDH-like
(99)
Protein domain
:
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
(61)
Trypanosoma cruzi [TaxId: 5693]
(5)
1a
d3idsa2
A:165-333
1b
d3idsb2
B:165-333
1c
d3idsc2
C:165-333
1d
d3idsd2
D:165-333
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
(61)
Trypanosoma cruzi [TaxId: 5693]
(5)
2a
d3idsa1
A:1-164,A:334-359
2b
d3idsb1
B:1-164,B:334-359
2c
d3idsc1
C:1-164,C:334-359
2d
d3idsd1
D:1-164,D:334-359
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_3idsA02 (A:165-335)
1b: CATH_3idsB02 (B:165-335)
1c: CATH_3idsC02 (C:165-335)
1d: CATH_3idsD02 (D:165-335)
2a: CATH_3idsA01 (A:2-164,A:336-355)
2b: CATH_3idsB01 (B:2-164,B:336-355)
2c: CATH_3idsC01 (C:2-164,C:336-355)
2d: CATH_3idsD01 (D:2-164,D:336-355)
View:
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Architectures
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Topologies
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Trypanosoma cruzi. Organism_taxid: 5693.
(3)
1a
3idsA02
A:165-335
1b
3idsB02
B:165-335
1c
3idsC02
C:165-335
1d
3idsD02
D:165-335
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Trypanosoma cruzi. Organism_taxid: 5693.
(3)
2a
3idsA01
A:2-164,A:336-355
2b
3idsB01
B:2-164,B:336-355
2c
3idsC01
C:2-164,C:336-355
2d
3idsD01
D:2-164,D:336-355
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain C
Chain D
Asymmetric Unit 1
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