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Getting 'Exon' information from database.
3IBC
Asym. Unit
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Asym.Unit (84 KB)
Biol.Unit 1 (80 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CASPASE-7 INCOMPLEX WITH ACETYL-YVAD-CHO
Authors
:
J. Agniswamy
Date
:
15 Jul 09 (Deposition) - 01 Sep 09 (Release) - 10 Nov 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Protein-Peptide Complex, Alternative Splicing, Apoptosis, Cytoplasm, Hydrolase, Polymorphism, Protease, Thiol Protease, Zymogen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Agniswamy, B. Fang, I. T. Weber
Conformational Similarity In The Activation Of Caspase-3 And -7 Revealed By The Unliganded And Inhibited Structures Of Caspase-7.
Apoptosis V. 14 1135 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
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Sites
(0, 0)
Info
All Sites
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Select:
Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048618 (D555E, chain B/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048618
D
255
E
CASP7_HUMAN
Polymorphism
2227310
B
D
D
255
555
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: CASPASE_P20 (A:66-190,C:366-490)
2: CASPASE_HIS (A:131-145,C:431-445)
3: CASPASE_CYS (A:177-188,C:477-488)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CASPASE_P20
PS50208
Caspase family p20 domain profile.
CASP7_HUMAN
66-190
2
A:66-190
C:366-490
2
CASPASE_HIS
PS01121
Caspase family histidine active site.
CASP7_HUMAN
131-145
2
A:131-145
C:431-445
3
CASPASE_CYS
PS01122
Caspase family cysteine active site.
CASP7_HUMAN
177-188
2
A:177-188
C:477-488
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Exons
(5, 12)
Info
All Exons
Exon 1.6b (A:57-83 | - | C:357-383 | -)
Exon 1.7d (A:83-126 | - | C:383-426 | -)
Exon 1.8c (A:126-184 | - | C:426-484 | -)
Exon 1.10b (A:185-196 | B:212-228 | C:485-496 ...)
Exon 1.11c (- | B:228-303 | - | D:528-603)
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All Exon Boundaries
1: Boundary 1.4b/1.6b
2: Boundary 1.6b/1.7d
3: Boundary 1.7d/1.8c
4: Boundary 1.8c/1.10b
5: Boundary 1.10b/1.11c
6: Boundary 1.11c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2c
ENST00000369318
2c
ENSE00001832746
chr10:
115439636-115439737
102
CASP7_HUMAN
-
0
0
-
-
1.4b
ENST00000369318
4b
ENSE00001749353
chr10:
115457253-115457362
110
CASP7_HUMAN
1-37
37
0
-
-
1.6b
ENST00000369318
6b
ENSE00001096780
chr10:
115480791-115480927
137
CASP7_HUMAN
37-83
47
2
A:57-83
-
C:357-383
-
27
-
27
-
1.7d
ENST00000369318
7d
ENSE00001096775
chr10:
115481410-115481538
129
CASP7_HUMAN
83-126
44
2
A:83-126
-
C:383-426
-
44
-
44
-
1.8c
ENST00000369318
8c
ENSE00001096779
chr10:
115485121-115485296
176
CASP7_HUMAN
126-184
59
2
A:126-184
-
C:426-484
-
59
-
59
-
1.10b
ENST00000369318
10b
ENSE00001656181
chr10:
115486064-115486193
130
CASP7_HUMAN
185-228
44
4
A:185-196
B:212-228
C:485-496
D:511-528
12
17
12
18
1.11c
ENST00000369318
11c
ENSE00001591443
chr10:
115489070-115490662
1593
CASP7_HUMAN
228-303
76
2
-
B:228-303
-
D:528-603
-
76
-
76
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SCOP Domains
(0, 0)
Info
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3ibcA00 (A:57-196)
1b: CATH_3ibcC00 (C:357-496)
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(
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)
Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1460, no name defined]
(93)
Human (Homo sapiens)
(87)
1a
3ibcA00
A:57-196
1b
3ibcC00
C:357-496
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Pfam Domains
(0, 0)
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all PFAM domains
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