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3IA6
Biol. Unit 2
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Asym.Unit (90 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (87 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF THE NUCLEAR HORMONE RECEPTOR PPAR-GAMMA IN A COMPLEX WITH A PPAR GAMMA/ALPHA DUAL AGONIST
Authors
:
J. F. Ohren
Date
:
13 Jul 09 (Deposition) - 13 Oct 09 (Release) - 10 Nov 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.31
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Protein-Ligand Complex, Dual Specificity, Inhibitor, Activator, Alternative Splicing, Diabetes Mellitus, Disease Mutation, Dna-Binding, Metal-Binding, Nucleus, Obesity, Phosphoprotein, Polymorphism, Receptor, Transcription, Transcription Regulation, Zinc, Zinc-Finger
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Casimiro-Garcia, C. F. Bigge, J. A. Davis, T. Padalino, J. Pulaski, J. F. Ohren, P. Mcconnell, C. D. Kane, L. J. Royer, K. A. Stevens, B. Auerbach, W. Collard, C. Mcgregor, K. Song
Synthesis And Evaluation Of Novel Alpha-Heteroaryl-Phenylpropanoic Acid Derivatives As Pparalpha/Gamma Dual Agonists.
Bioorg. Med. Chem. V. 17 7113 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: (2S)-3-{4-[3-(5-METHYL-2-PHENYL-1,... (UNTa)
1b: (2S)-3-{4-[3-(5-METHYL-2-PHENYL-1,... (UNTb)
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No.
Name
Count
Type
Full Name
1
UNT
1
Ligand/Ion
(2S)-3-{4-[3-(5-METHYL-2-PHENYL-1,3-OXAZOL-4-YL)PROPYL]PHENYL}-2-(2H-1,2,3-TRIAZOL-2-YL)PROPANOIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:46 , PHE A:282 , CYS A:285 , GLN A:286 , SER A:289 , HIS A:323 , TYR A:327 , LEU A:330 , ILE A:341 , MET A:364 , HIS A:449 , LEU A:469 , TYR A:473
BINDING SITE FOR RESIDUE UNT A 1
2
AC2
SOFTWARE
PHE B:264 , PHE B:282 , CYS B:285 , GLN B:286 , SER B:289 , HIS B:323 , TYR B:327 , ILE B:341 , PHE B:363 , HIS B:449
BINDING SITE FOR RESIDUE UNT B 2
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SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_010725 (Q286P, chain A/B, )
2: VAR_010726 (R288H, chain A/B, )
3: VAR_010727 (V290M, chain A/B, )
4: VAR_022700 (F360L, chain A/B, )
5: VAR_022701 (R397C, chain A/B, )
6: VAR_010728 (P467L, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_010725
Q
314
P
PPARG_HUMAN
Unclassified
28936407
A/B
Q
286
P
2
UniProt
VAR_010726
R
316
H
PPARG_HUMAN
Unclassified
28936407
A/B
R
288
H
3
UniProt
VAR_010727
V
318
M
PPARG_HUMAN
Unclassified
---
A/B
V
290
M
4
UniProt
VAR_022700
F
388
L
PPARG_HUMAN
Disease (FPLD3)
---
A/B
F
360
L
5
UniProt
VAR_022701
R
425
C
PPARG_HUMAN
Disease (FPLD3)
---
A/B
R
397
C
6
UniProt
VAR_010728
P
495
L
PPARG_HUMAN
Unclassified
---
A/B
P
467
L
SNP/SAP Summary Statistics
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(, 0)
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Exons
(0, 0)
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ia6a_ (A:)
1b: SCOP_d3ia6b_ (B:)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Peroxisome proliferator activated receptor gamma, PPAR-gamma
(83)
Human (Homo sapiens) [TaxId: 9606]
(83)
1a
d3ia6a_
A:
1b
d3ia6b_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (90 KB)
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