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3I6L
Asym. Unit
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Asym.Unit (74 KB)
Biol.Unit 1 (70 KB)
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(1)
Title
:
NEWLY IDENTIFIED EPITOPE N1 DERIVED FROM SARS-COV N PROTEIN COMPLEXED WITH HLA-A*2402
Authors
:
J. W. Liu
Date
:
07 Jul 09 (Deposition) - 14 Jul 10 (Release) - 10 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : D,E,F
Biol. Unit 1: D,E,F (1x)
Keywords
:
Hla-A*2402, Sars-Cov, Nucleocapsid Protein, Disulfide Bond, Glycoprotein, Host-Virus Interaction, Immune Response, Membrane, Mhc I, Transmembrane, Disease Mutation, Glycation, Immunoglobulin Domain, Pyrrolidone Carboxylic Acid, Secreted, Golgi Apparatus, Phosphoprotein, Ribonucleoprotein, Rna-Binding, Viral Nucleoprotein, Virion, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Liu, P. Wu, F. Gao, J. Qi, A. Kawana-Tachikawa, J. Xie, C. J. Vavricka A. Iwamoto, T. Li, G. F. Gao
Novel Immunodominant Peptide Presentation Strategy: A Featured Hla-A*2402-Restricted Cytotoxic T-Lymphocyte Epitope Stabilized By Intrachain Hydrogen Bonds From Severe Acute Respiratory Syndrome Coronavirus Nucleocapsid Protein
J. Virol. V. 84 11849 2010
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(12, 12)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_004355 (H3Q, chain D, )
02: VAR_004356 (E62G, chain D, )
03: VAR_004357 (G65R, chain D, )
04: VAR_015765 (L95V, chain D, )
05: VAR_015766 (M97R, chain D, )
06: VAR_015767 (F99Y, chain D, )
07: VAR_015768 (G107W, chain D, )
08: VAR_015769 (Q156L, chain D, )
09: VAR_004358 (Q156W, chain D, )
10: VAR_015770 (T163R, chain D, )
11: VAR_056263 (R181H, chain D, )
12: VAR_004360 (T182A, chain D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_004355
H
27
Q
1A24_HUMAN
Polymorphism
41541319
D
H
3
Q
02
UniProt
VAR_004356
E
86
G
1A24_HUMAN
Polymorphism
---
D
E
62
G
03
UniProt
VAR_004357
G
89
R
1A24_HUMAN
Polymorphism
---
D
G
65
R
04
UniProt
VAR_015765
L
119
V
1A24_HUMAN
Polymorphism
---
D
L
95
V
05
UniProt
VAR_015766
M
121
R
1A24_HUMAN
Polymorphism
---
D
M
97
R
06
UniProt
VAR_015767
F
123
Y
1A24_HUMAN
Polymorphism
---
D
F
99
Y
07
UniProt
VAR_015768
G
131
W
1A24_HUMAN
Polymorphism
---
D
G
107
W
08
UniProt
VAR_015769
Q
180
L
1A24_HUMAN
Polymorphism
---
D
Q
156
L
09
UniProt
VAR_004358
Q
180
W
1A24_HUMAN
Polymorphism
---
D
Q
156
W
10
UniProt
VAR_015770
T
187
R
1A24_HUMAN
Polymorphism
---
D
T
163
R
11
UniProt
VAR_056263
R
205
H
1A24_HUMAN
Polymorphism
17185861
D
R
181
H
12
UniProt
VAR_004360
T
206
A
1A24_HUMAN
Polymorphism
---
D
T
182
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (E:78-84,D:257-263)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_HUMAN
98-104
1
E:78-84
1A24_HUMAN
281-287
1
D:257-263
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Exons
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SCOP Domains
(1, 1)
Info
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1a: SCOP_d3i6le_ (E:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Human (Homo sapiens) [TaxId: 9606]
(350)
1a
d3i6le_
E:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (74 KB)
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