PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
3I6A
Biol. Unit 2
Info
Asym.Unit (307 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (79 KB)
Biol.Unit 3 (77 KB)
Biol.Unit 4 (77 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
HUMAN GST A1-1 GIMF MUTANT WITH GLUTATHIONE
Authors
:
L. M. Balogh, I. Le Trong, R. E. Stenkamp, W. M. Atkins
Date
:
06 Jul 09 (Deposition) - 01 Sep 09 (Release) - 21 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Human Gst A1-1, Enzyme, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. M. Balogh, I. Le Trong, K. A. Kripps, K. Tars, R. E. Stenkamp, B. Mannervik, W. M. Atkins
Structural Analysis Of A Glutathione Transferase A1-1 Mutan Tailored For High Catalytic Efficiency With Toxic Alkenals.
Biochemistry V. 48 7698 2009
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
1b: GLUTATHIONE (GSHb)
1c: GLUTATHIONE (GSHc)
1d: GLUTATHIONE (GSHd)
1e: GLUTATHIONE (GSHe)
1f: GLUTATHIONE (GSHf)
1g: GLUTATHIONE (GSHg)
1h: GLUTATHIONE (GSHh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GSH
2
Ligand/Ion
GLUTATHIONE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
TYR C:9 , ARG C:15 , ARG C:45 , GLN C:54 , VAL C:55 , PRO C:56 , GLN C:67 , THR C:68 , PHE C:220 , HOH C:6368 , HOH C:6422 , ASP D:101 , ARG D:131
BINDING SITE FOR RESIDUE GSH C 5103
2
AC4
SOFTWARE
ASP C:101 , ARG C:131 , TYR D:9 , ARG D:15 , ARG D:45 , GLN D:54 , VAL D:55 , GLN D:67 , THR D:68 , PHE D:220 , HOH D:6243 , HOH D:6279 , HOH D:6481
BINDING SITE FOR RESIDUE GSH D 5104
[
close Site info
]
SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_033978 (T19I, chain C/D, )
2: VAR_049482 (P113Q, chain C/D, )
3: VAR_049483 (K117Q, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033978
T
19
I
GSTA1_HUMAN
Polymorphism
1051578
C/D
T
19
I
2
UniProt
VAR_049482
P
113
Q
GSTA1_HUMAN
Polymorphism
1051745
C/D
P
113
Q
3
UniProt
VAR_049483
K
117
Q
GSTA1_HUMAN
Polymorphism
1051757
C/D
K
117
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GST_NTER (C:3-83,D:3-83)
2: GST_CTER (C:85-207,D:85-207)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_NTER
PS50404
Soluble glutathione S-transferase N-terminal domain profile.
GSTA1_HUMAN
3-83
2
-
-
C:3-83
D:3-83
-
-
-
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTA1_HUMAN
85-207
2
-
-
C:85-207
D:85-207
-
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d3i6aa2 (A:81-220)
1b: SCOP_d3i6ab2 (B:81-222)
1c: SCOP_d3i6ac2 (C:81-220)
1d: SCOP_d3i6ad2 (D:81-220)
1e: SCOP_d3i6ae2 (E:81-220)
1f: SCOP_d3i6af2 (F:81-220)
1g: SCOP_d3i6ag2 (G:81-220)
1h: SCOP_d3i6ah2 (H:81-220)
2a: SCOP_d3i6aa1 (A:2-80)
2b: SCOP_d3i6ab1 (B:2-80)
2c: SCOP_d3i6ac1 (C:2-80)
2d: SCOP_d3i6ad1 (D:2-80)
2e: SCOP_d3i6ae1 (E:2-80)
2f: SCOP_d3i6af1 (F:4-80)
2g: SCOP_d3i6ag1 (G:2-80)
2h: SCOP_d3i6ah1 (H:2-80)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Class alpha GST
(53)
Human (Homo sapiens), (a1-1) [TaxId: 9606]
(27)
1a
d3i6aa2
A:81-220
1b
d3i6ab2
B:81-222
1c
d3i6ac2
C:81-220
1d
d3i6ad2
D:81-220
1e
d3i6ae2
E:81-220
1f
d3i6af2
F:81-220
1g
d3i6ag2
G:81-220
1h
d3i6ah2
H:81-220
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Class alpha GST
(53)
Human (Homo sapiens), (a1-1) [TaxId: 9606]
(27)
2a
d3i6aa1
A:2-80
2b
d3i6ab1
B:2-80
2c
d3i6ac1
C:2-80
2d
d3i6ad1
D:2-80
2e
d3i6ae1
E:2-80
2f
d3i6af1
F:4-80
2g
d3i6ag1
G:2-80
2h
d3i6ah1
H:2-80
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_3i6aB01 (B:2-81,B:191-222)
1b: CATH_3i6aA01 (A:2-81,A:191-220)
1c: CATH_3i6aC01 (C:2-81,C:191-220)
1d: CATH_3i6aD01 (D:2-81,D:191-220)
1e: CATH_3i6aE01 (E:2-81,E:191-220)
1f: CATH_3i6aG01 (G:2-81,G:191-220)
1g: CATH_3i6aH01 (H:2-81,H:191-220)
1h: CATH_3i6aF01 (F:4-81,F:191-220)
2a: CATH_3i6aA02 (A:82-190)
2b: CATH_3i6aB02 (B:82-190)
2c: CATH_3i6aC02 (C:82-190)
2d: CATH_3i6aD02 (D:82-190)
2e: CATH_3i6aE02 (E:82-190)
2f: CATH_3i6aF02 (F:82-190)
2g: CATH_3i6aG02 (G:82-190)
2h: CATH_3i6aH02 (H:82-190)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
3i6aB01
B:2-81,B:191-222
1b
3i6aA01
A:2-81,A:191-220
1c
3i6aC01
C:2-81,C:191-220
1d
3i6aD01
D:2-81,D:191-220
1e
3i6aE01
E:2-81,E:191-220
1f
3i6aG01
G:2-81,G:191-220
1g
3i6aH01
H:2-81,H:191-220
1h
3i6aF01
F:4-81,F:191-220
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Human (Homo sapiens)
(119)
2a
3i6aA02
A:82-190
2b
3i6aB02
B:82-190
2c
3i6aC02
C:82-190
2d
3i6aD02
D:82-190
2e
3i6aE02
E:82-190
2f
3i6aF02
F:82-190
2g
3i6aG02
G:82-190
2h
3i6aH02
H:82-190
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (307 KB)
Header - Asym.Unit
Biol.Unit 1 (79 KB)
Header - Biol.Unit 1
Biol.Unit 2 (79 KB)
Header - Biol.Unit 2
Biol.Unit 3 (77 KB)
Header - Biol.Unit 3
Biol.Unit 4 (77 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3I6A
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help