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3I4W
Asym. Unit
Info
Asym.Unit (70 KB)
Biol.Unit 1 (18 KB)
Biol.Unit 2 (18 KB)
Biol.Unit 3 (18 KB)
Biol.Unit 4 (18 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE THIRD PDZ DOMAIN OF PSD-95
Authors
:
A. Camara-Artigas, J. A. Gavira
Date
:
03 Jul 09 (Deposition) - 07 Apr 10 (Release) - 12 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Alpha And Beta Protein, Cell Junction, Cell Membrane, Lipoprotein, Membrane, Palmitate, Phosphoprotein, Postsynaptic Cell Membrane, Sh3 Domain, Synapse, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. Camara-Artigas, J. Murciano-Calles, J. A. Gavira, E. S. Cobos, J. C. Martinez
Novel Conformational Aspects Of The Third Pdz Domain Of The Neuronal Post-Synaptic Density-95 Protein Revealed From Two 1. 4A X-Ray Structures
J. Struct. Biol. V. 170 565 2010
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
2a: L-3-AMINOSUCCINIMIDE (SNNa)
2b: L-3-AMINOSUCCINIMIDE (SNNb)
2c: L-3-AMINOSUCCINIMIDE (SNNc)
2d: L-3-AMINOSUCCINIMIDE (SNNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
6
Ligand/Ion
ACETATE ION
2
SNN
4
Mod. Amino Acid
L-3-AMINOSUCCINIMIDE
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:147 , SER A:320 , THR A:321 , PRO A:346 , ARG C:368 , GLN D:384
BINDING SITE FOR RESIDUE ACT A 4
2
AC2
SOFTWARE
HOH A:102 , ASN A:326 , ILE A:327 , HIS A:372 , ARG C:313
BINDING SITE FOR RESIDUE ACT A 5
3
AC3
SOFTWARE
ASN B:326 , ILE B:327 , HIS B:372 , ARG D:312 , ARG D:313
BINDING SITE FOR RESIDUE ACT B 1
4
AC4
SOFTWARE
ARG A:368 , GLN B:384 , HOH C:89 , SER C:320 , THR C:321 , PRO C:346
BINDING SITE FOR RESIDUE ACT C 2
5
AC5
SOFTWARE
ARG A:312 , ARG A:313 , ASN C:326 , ILE C:327 , HIS C:372
BINDING SITE FOR RESIDUE ACT C 3
6
AC6
SOFTWARE
ARG B:312 , ARG B:313 , ASN D:326 , ILE D:327 , HIS D:372
BINDING SITE FOR RESIDUE ACT D 6
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PDZ (-|-|A:313-394,B:313-394,C:313-394,...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
DLG4_HUMAN
65-152
160-247
313-394
4
-
-
A:313-394
B:313-394
C:313-394
D:313-394
[
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Exons
(3, 12)
Info
All Exons
Exon 1.15 (A:305-361 | B:305-361 | C:305-361 ...)
Exon 1.16 (A:362-396 | B:362-396 | C:362-396 ...)
Exon 1.17 (A:396-402 | B:396-402 | C:396-402 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.14b/1.15
2: Boundary 1.15/1.16
3: Boundary 1.16/1.17
4: Boundary 1.17/1.18
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4b
ENST00000399506
4b
ENSE00001538727
chr17:
7120658-7120437
222
DLG4_HUMAN
1-10
10
0
-
-
1.6a
ENST00000399506
6a
ENSE00001151044
chr17:
7111558-7111493
66
DLG4_HUMAN
11-32
22
0
-
-
1.9c
ENST00000399506
9c
ENSE00001538778
chr17:
7107571-7107515
57
DLG4_HUMAN
33-51
19
0
-
-
1.10b
ENST00000399506
10b
ENSE00001429362
chr17:
7107383-7107327
57
DLG4_HUMAN
52-70
19
0
-
-
1.11
ENST00000399506
11
ENSE00001151032
chr17:
7107135-7107011
125
DLG4_HUMAN
71-112
42
0
-
-
1.12b
ENST00000399506
12b
ENSE00001151025
chr17:
7106912-7106743
170
DLG4_HUMAN
112-169
58
0
-
-
1.13b
ENST00000399506
13b
ENSE00001151019
chr17:
7106648-7106512
137
DLG4_HUMAN
169-214
46
0
-
-
1.14b
ENST00000399506
14b
ENSE00001061571
chr17:
7106366-7106222
145
DLG4_HUMAN
215-263
49
0
-
-
1.15
ENST00000399506
15
ENSE00000905440
chr17:
7100371-7100076
296
DLG4_HUMAN
263-361
99
4
A:305-361
B:305-361
C:305-361
D:305-361
57
57
57
57
1.16
ENST00000399506
16
ENSE00000905439
chr17:
7099894-7099792
103
DLG4_HUMAN
362-396
35
4
A:362-396
B:362-396
C:362-396
D:362-396
35
35
35
35
1.17
ENST00000399506
17
ENSE00001151000
chr17:
7099653-7099539
115
DLG4_HUMAN
396-434
39
4
A:396-402
B:396-402
C:396-402
D:396-402
7
7
7
7
1.18
ENST00000399506
18
ENSE00000905437
chr17:
7097814-7097638
177
DLG4_HUMAN
434-493
60
0
-
-
1.19
ENST00000399506
19
ENSE00001061566
chr17:
7097319-7097283
37
DLG4_HUMAN
493-505
13
0
-
-
1.20
ENST00000399506
20
ENSE00001061565
chr17:
7097190-7097163
28
DLG4_HUMAN
506-515
10
0
-
-
1.21
ENST00000399506
21
ENSE00001061572
chr17:
7097033-7096986
48
DLG4_HUMAN
515-531
17
0
-
-
1.22a
ENST00000399506
22a
ENSE00001770579
chr17:
7096903-7096802
102
DLG4_HUMAN
531-565
35
0
-
-
1.23
ENST00000399506
23
ENSE00000905432
chr17:
7096436-7096264
173
DLG4_HUMAN
565-622
58
0
-
-
1.24b
ENST00000399506
24b
ENSE00000905431
chr17:
7095321-7095212
110
DLG4_HUMAN
623-659
37
0
-
-
1.24c
ENST00000399506
24c
ENSE00000905430
chr17:
7094677-7094586
92
DLG4_HUMAN
659-690
32
0
-
-
1.25b
ENST00000399506
25b
ENSE00001538768
chr17:
7094133-7093209
925
DLG4_HUMAN
690-724
35
0
-
-
[
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]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3i4wa_ (A:)
1b: SCOP_d3i4wb_ (B:)
1c: SCOP_d3i4wc_ (C:)
1d: SCOP_d3i4wd_ (D:)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
PDZ domain
(180)
Protein domain
:
automated matches
(53)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d3i4wa_
A:
1b
d3i4wb_
B:
1c
d3i4wc_
C:
1d
d3i4wd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3i4wA00 (A:305-402)
1b: CATH_3i4wB00 (B:305-402)
1c: CATH_3i4wC00 (C:305-402)
1d: CATH_3i4wD00 (D:305-402)
View:
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(
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(
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(
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Homologous Superfamilies
(
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(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Human (Homo sapiens)
(120)
1a
3i4wA00
A:305-402
1b
3i4wB00
B:305-402
1c
3i4wC00
C:305-402
1d
3i4wD00
D:305-402
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
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Protein & NOT Site
Protein & NOT PROSITE
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