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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
3I4U
Asym. Unit
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Asym.Unit (98 KB)
Biol.Unit 1 (183 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF A HELICASE ASSOCIATED DOMAIN
Authors
:
D. Kudlinzki, R. Ficner
Date
:
02 Jul 09 (Deposition) - 07 Jul 10 (Release) - 21 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Helicase, Splicing, Atp-Binding, Hydrolase, Mrna Processing, Mrna Splicing, Nucleotide-Binding, Nucleus, Phosphoprotein, Spliceosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Kudlinzki, A. Schmitt, H. Christian, R. Ficner
Structural Analysis Of The C-Terminal Domain Of The Spliceosomal Helicase Prp22
Biol. Chem. V. 393 1131 2012
[
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BR
3
Ligand/Ion
BROMIDE ION
2
GOL
7
Ligand/Ion
GLYCEROL
[
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]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:975 , ARG A:979 , HIS A:998
BINDING SITE FOR RESIDUE BR A 1
02
AC2
SOFTWARE
HOH A:2067
BINDING SITE FOR RESIDUE BR A 2
03
AC3
SOFTWARE
VAL A:1014 , GLN A:1015 , ARG A:1074
BINDING SITE FOR RESIDUE BR A 3
04
AC4
SOFTWARE
TYR A:1049 , GLN A:1076 , ARG A:1079 , LYS A:1080 , LEU A:1083
BINDING SITE FOR RESIDUE GOL A 11
05
AC5
SOFTWARE
GOL A:13 , GLY A:1084 , ILE A:1085 , ARG A:1088 , HIS A:1089 , HOH A:2051 , HOH A:2147
BINDING SITE FOR RESIDUE GOL A 12
06
AC6
SOFTWARE
GOL A:12 , LYS A:1080 , GLN A:1081 , GLY A:1084 , HOH A:2052
BINDING SITE FOR RESIDUE GOL A 13
07
AC7
SOFTWARE
SER A:1051 , ASN A:1055 , TRP A:1061 , HOH A:2074 , HOH A:2155
BINDING SITE FOR RESIDUE GOL A 14
08
AC8
SOFTWARE
LYS A:1032 , ASP A:1041 , LEU A:1045 , GLU A:1164 , HOH A:2104 , HOH A:2109
BINDING SITE FOR RESIDUE GOL A 15
09
AC9
SOFTWARE
LYS A:1105 , ARG A:1171 , TRP A:1172 , PRO A:1178
BINDING SITE FOR RESIDUE GOL A 16
10
BC1
SOFTWARE
PRO A:984 , GLN A:1081
BINDING SITE FOR RESIDUE GOL A 17
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_052174 (A1069G, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_052174
A
1069
G
DHX8_HUMAN
Polymorphism
34285079
A
A
1069
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(5, 5)
Info
All Exons
Exon 1.19 (A:948-979)
Exon 1.20 (A:980-1022)
Exon 1.21 (A:1023-1088)
Exon 1.22 (A:1088-1148)
Exon 1.23 (A:1148-1194 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.18/1.19
2: Boundary 1.19/1.20
3: Boundary 1.20/1.21
4: Boundary 1.21/1.22
5: Boundary 1.22/1.23
6: Boundary 1.23/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000262415
1
ENSE00001280005
chr17:
41561334-41561553
220
DHX8_HUMAN
1-50
50
0
-
-
1.2
ENST00000262415
2
ENSE00000897775
chr17:
41566817-41566902
86
DHX8_HUMAN
50-78
29
0
-
-
1.3
ENST00000262415
3
ENSE00000897782
chr17:
41567759-41567831
73
DHX8_HUMAN
79-103
25
0
-
-
1.4
ENST00000262415
4
ENSE00000897789
chr17:
41568533-41568618
86
DHX8_HUMAN
103-131
29
0
-
-
1.5
ENST00000262415
5
ENSE00000897797
chr17:
41569551-41569660
110
DHX8_HUMAN
132-168
37
0
-
-
1.6
ENST00000262415
6
ENSE00001133080
chr17:
41570049-41570408
360
DHX8_HUMAN
168-288
121
0
-
-
1.7
ENST00000262415
7
ENSE00001133071
chr17:
41570813-41570957
145
DHX8_HUMAN
288-336
49
0
-
-
1.8
ENST00000262415
8
ENSE00001133060
chr17:
41571051-41571254
204
DHX8_HUMAN
337-404
68
0
-
-
1.9
ENST00000262415
9
ENSE00001118560
chr17:
41573549-41573636
88
DHX8_HUMAN
405-434
30
0
-
-
1.10
ENST00000262415
10
ENSE00001118561
chr17:
41576230-41576327
98
DHX8_HUMAN
434-466
33
0
-
-
1.11
ENST00000262415
11
ENSE00000731685
chr17:
41577324-41577471
148
DHX8_HUMAN
467-516
50
0
-
-
1.12
ENST00000262415
12
ENSE00000731684
chr17:
41582012-41582193
182
DHX8_HUMAN
516-576
61
0
-
-
1.13
ENST00000262415
13
ENSE00000731682
chr17:
41584371-41584565
195
DHX8_HUMAN
577-641
65
0
-
-
1.14
ENST00000262415
14
ENSE00000731681
chr17:
41584871-41585056
186
DHX8_HUMAN
642-703
62
0
-
-
1.15
ENST00000262415
15
ENSE00000731679
chr17:
41585177-41585387
211
DHX8_HUMAN
704-774
71
0
-
-
1.16
ENST00000262415
16
ENSE00001279910
chr17:
41585707-41585888
182
DHX8_HUMAN
774-834
61
0
-
-
1.17
ENST00000262415
17
ENSE00001279902
chr17:
41590730-41590870
141
DHX8_HUMAN
835-881
47
0
-
-
1.18
ENST00000262415
18
ENSE00001279895
chr17:
41594535-41594690
156
DHX8_HUMAN
882-933
52
0
-
-
1.19
ENST00000262415
19
ENSE00001279890
chr17:
41597498-41597635
138
DHX8_HUMAN
934-979
46
1
A:948-979
32
1.20
ENST00000262415
20
ENSE00001279884
chr17:
41598119-41598247
129
DHX8_HUMAN
980-1022
43
1
A:980-1022
43
1.21
ENST00000262415
21
ENSE00001279875
chr17:
41598737-41598933
197
DHX8_HUMAN
1023-1088
66
1
A:1023-1088
66
1.22
ENST00000262415
22
ENSE00001279867
chr17:
41599415-41599594
180
DHX8_HUMAN
1088-1148
61
1
A:1088-1148
61
1.23
ENST00000262415
23
ENSE00001311829
chr17:
41600996-41601680
685
DHX8_HUMAN
1148-1220
73
1
A:1148-1194 (gaps)
51
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (98 KB)
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