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3I4K
Biol. Unit 2
Info
Asym.Unit (471 KB)
Biol.Unit 1 (122 KB)
Biol.Unit 2 (120 KB)
Biol.Unit 3 (123 KB)
Biol.Unit 4 (120 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MUCONATE LACTONIZING ENZYME FROM CORYNEBACTERIUM GLUTAMICUM
Authors
:
A. A. Fedorov, E. V. Fedorov, J. M. Sauder, S. K. Burley, J. A. Gerlt, S. C. Almo, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
01 Jul 09 (Deposition) - 14 Jul 09 (Release) - 14 Jul 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Structural Genomics, Nysgxrc, Target 9450D, Muconate Lactonizing Enzyme, Corynebacterium Glutamicum, Crystal Structure, Isomerase, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Fedorov, E. V. Fedorov, J. M. Sauder, S. K. Burley, J. A. Gerlt, S. C. Almo
Crystal Structure Of Muconate Lactonizing Enzyme From Corynebacterium Glutamicum
To Be Published
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
1g: ACETIC ACID (ACYg)
1h: ACETIC ACID (ACYh)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3ao: SELENOMETHIONINE (MSEao)
3ap: SELENOMETHIONINE (MSEap)
3aq: SELENOMETHIONINE (MSEaq)
3ar: SELENOMETHIONINE (MSEar)
3as: SELENOMETHIONINE (MSEas)
3at: SELENOMETHIONINE (MSEat)
3au: SELENOMETHIONINE (MSEau)
3av: SELENOMETHIONINE (MSEav)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
2
Ligand/Ion
ACETIC ACID
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
[
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]
Sites
(4, 4)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
TRP C:61 , LYS C:169 , ASP C:200 , ASN C:202 , GLU C:226 , ASP C:251 , LYS C:275 , MG C:385
BINDING SITE FOR RESIDUE ACY C 384
2
AC6
SOFTWARE
ASP C:200 , GLU C:226 , ASP C:251 , ACY C:384 , HOH C:963
BINDING SITE FOR RESIDUE MG C 385
3
AC7
SOFTWARE
PRO D:56 , TRP D:61 , LYS D:169 , ASP D:200 , ASN D:202 , GLU D:226 , ASP D:251 , LYS D:275 , THR D:303 , MG D:385
BINDING SITE FOR RESIDUE ACY D 384
4
AC8
SOFTWARE
ASP D:200 , GLU D:226 , ASP D:251 , ACY D:384 , HOH D:964
BINDING SITE FOR RESIDUE MG D 385
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d3i4ka1 (A:5-132)
1b: SCOP_d3i4kb1 (B:5-132)
1c: SCOP_d3i4kc1 (C:5-132)
1d: SCOP_d3i4kd1 (D:5-132)
1e: SCOP_d3i4ke1 (E:5-132)
1f: SCOP_d3i4kf1 (F:5-132)
1g: SCOP_d3i4kg1 (G:5-132)
1h: SCOP_d3i4kh1 (H:5-132)
2a: SCOP_d3i4ka2 (A:133-374)
2b: SCOP_d3i4kb2 (B:133-374)
2c: SCOP_d3i4kc2 (C:133-374)
2d: SCOP_d3i4kd2 (D:133-374)
2e: SCOP_d3i4ke2 (E:133-374)
2f: SCOP_d3i4kf2 (F:133-374)
2g: SCOP_d3i4kg2 (G:133-374)
2h: SCOP_d3i4kh2 (H:133-374)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
automated matches
(123)
Protein domain
:
automated matches
(123)
Corynebacterium glutamicum [TaxId: 1718]
(1)
1a
d3i4ka1
A:5-132
1b
d3i4kb1
B:5-132
1c
d3i4kc1
C:5-132
1d
d3i4kd1
D:5-132
1e
d3i4ke1
E:5-132
1f
d3i4kf1
F:5-132
1g
d3i4kg1
G:5-132
1h
d3i4kh1
H:5-132
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
automated matches
(102)
Protein domain
:
automated matches
(102)
Corynebacterium glutamicum [TaxId: 1718]
(1)
2a
d3i4ka2
A:133-374
2b
d3i4kb2
B:133-374
2c
d3i4kc2
C:133-374
2d
d3i4kd2
D:133-374
2e
d3i4ke2
E:133-374
2f
d3i4kf2
F:133-374
2g
d3i4kg2
G:133-374
2h
d3i4kh2
H:133-374
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_3i4kA01 (A:5-122)
1b: CATH_3i4kB01 (B:5-122)
1c: CATH_3i4kC01 (C:5-122)
1d: CATH_3i4kD01 (D:5-122)
1e: CATH_3i4kE01 (E:5-122)
1f: CATH_3i4kF01 (F:5-122)
1g: CATH_3i4kG01 (G:5-122)
1h: CATH_3i4kH01 (H:5-122)
2a: CATH_3i4kA02 (A:123-374)
2b: CATH_3i4kB02 (B:123-374)
2c: CATH_3i4kC02 (C:123-374)
2d: CATH_3i4kD02 (D:123-374)
2e: CATH_3i4kE02 (E:123-374)
2f: CATH_3i4kF02 (F:123-374)
2g: CATH_3i4kG02 (G:123-374)
2h: CATH_3i4kH02 (H:123-374)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
Enolase-like, N-terminal domain
(130)
Brevibacterium flavum (Corynebacterium glutamicum)
(1)
1a
3i4kA01
A:5-122
1b
3i4kB01
B:5-122
1c
3i4kC01
C:5-122
1d
3i4kD01
D:5-122
1e
3i4kE01
E:5-122
1f
3i4kF01
F:5-122
1g
3i4kG01
G:5-122
1h
3i4kH01
H:5-122
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Enolase superfamily
(142)
Brevibacterium flavum (Corynebacterium glutamicum)
(1)
2a
3i4kA02
A:123-374
2b
3i4kB02
B:123-374
2c
3i4kC02
C:123-374
2d
3i4kD02
D:123-374
2e
3i4kE02
E:123-374
2f
3i4kF02
F:123-374
2g
3i4kG02
G:123-374
2h
3i4kH02
H:123-374
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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