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3I3O
Biol. Unit 2
Info
Asym.Unit (394 KB)
Biol.Unit 1 (200 KB)
Biol.Unit 2 (183 KB)
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(1)
Title
:
2.06 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF A SHORT CHAIN DEHYDROGENASE FROM BACILLUS ANTHRACIS STR. 'AMES ANCESTOR' IN COMPLEX WITH NAD-ACETONE
Authors
:
A. S. Halavaty, G. Minasov, T. Skarina, O. Onopriyenko, S. Peterson, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date
:
30 Jun 09 (Deposition) - 04 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.06
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Short Chain Dehydrogenase, Structural Genomics, Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Oxidoreductase, Csgid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. S. Halavaty, G. Minasov, T. Skarina, O. Onopriyenko, S. Peterson, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 06 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'Ames Ancestor' In Complex With Nad-Acetone
To Be Published
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: CACODYLATE ION (CACa)
1b: CACODYLATE ION (CACb)
1c: CACODYLATE ION (CACc)
1d: CACODYLATE ION (CACd)
1e: CACODYLATE ION (CACe)
1f: CACODYLATE ION (CACf)
1g: CACODYLATE ION (CACg)
1h: CACODYLATE ION (CACh)
1i: CACODYLATE ION (CACi)
2a: CHLORIDE ION (CLa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
4a: NICOTINAMIDE ADENINE DINUCLEOTIDE ... (NAEa)
4b: NICOTINAMIDE ADENINE DINUCLEOTIDE ... (NAEb)
4c: NICOTINAMIDE ADENINE DINUCLEOTIDE ... (NAEc)
4d: NICOTINAMIDE ADENINE DINUCLEOTIDE ... (NAEd)
4e: NICOTINAMIDE ADENINE DINUCLEOTIDE ... (NAEe)
4f: NICOTINAMIDE ADENINE DINUCLEOTIDE ... (NAEf)
4g: NICOTINAMIDE ADENINE DINUCLEOTIDE ... (NAEg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAC
4
Ligand/Ion
CACODYLATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
NAE
3
Ligand/Ion
NICOTINAMIDE ADENINE DINUCLEOTIDE ACETONE ADDUCT
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Sites
(10, 10)
Info
All Sites
01: BC6 (SOFTWARE)
02: BC7 (SOFTWARE)
03: BC8 (SOFTWARE)
04: BC9 (SOFTWARE)
05: CC1 (SOFTWARE)
06: CC2 (SOFTWARE)
07: CC3 (SOFTWARE)
08: CC4 (SOFTWARE)
09: CC5 (SOFTWARE)
10: CC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
BC6
SOFTWARE
ASP E:53 , SER E:54 , GLU E:78 , NAE E:311 , HOH E:453 , HOH E:497
BINDING SITE FOR RESIDUE MG E 305
02
BC7
SOFTWARE
PRO E:19 , GLY E:51 , ASP E:53 , SER E:54 , GLY E:55 , ILE E:56 , TYR E:75 , LEU E:76 , GLU E:78 , GLY E:101 , ASP E:102 , LEU E:103 , ASN E:129 , VAL E:130 , ALA E:131 , GLN E:132 , GLN E:133 , ILE E:153 , TYR E:158 , THR E:178 , ALA E:179 , SER E:180 , TYR E:193 , LYS E:197 , PRO E:223 , GLY E:224 , ILE E:226 , THR E:228 , PRO E:229 , LEU E:230 , ILE E:231 , PHE E:243 , MG E:305 , HOH E:497 , HOH E:559
BINDING SITE FOR RESIDUE NAE E 311
03
BC8
SOFTWARE
SER E:122 , ASN E:124 , LYS E:170 , HOH E:510 , HOH E:552
BINDING SITE FOR RESIDUE CAC E 325
04
BC9
SOFTWARE
GLY F:20 , ASP F:53 , SER F:54 , GLU F:78 , NAE F:311 , HOH F:406 , HOH F:480
BINDING SITE FOR RESIDUE MG F 303
05
CC1
SOFTWARE
PRO F:19 , ASP F:53 , SER F:54 , GLY F:55 , ILE F:56 , TYR F:75 , LEU F:76 , GLU F:78 , GLY F:101 , ASP F:102 , LEU F:103 , ASN F:129 , VAL F:130 , ALA F:131 , GLN F:132 , GLN F:133 , ILE F:153 , TYR F:158 , THR F:178 , ALA F:179 , SER F:180 , TYR F:193 , LYS F:197 , PRO F:223 , GLY F:224 , ILE F:226 , THR F:228 , PRO F:229 , LEU F:230 , MG F:303 , HOH F:480 , HOH F:481
BINDING SITE FOR RESIDUE NAE F 311
06
CC2
SOFTWARE
GLU F:106 , LYS F:110 , LYS F:163 , HOH F:483
BINDING SITE FOR RESIDUE CAC F 329
07
CC3
SOFTWARE
GLN G:133 , SER G:180 , TYR G:193 , GLY G:224 , HOH G:464
BINDING SITE FOR RESIDUE CAC G 326
08
CC4
SOFTWARE
ASP H:53 , SER H:54 , GLU H:78 , NAE H:311 , HOH H:500 , HOH H:511
BINDING SITE FOR RESIDUE MG H 307
09
CC5
SOFTWARE
ASP H:53 , SER H:54 , GLY H:55 , ILE H:56 , TYR H:75 , LEU H:76 , GLU H:78 , GLY H:101 , ASP H:102 , LEU H:103 , ASN H:129 , VAL H:130 , ALA H:131 , GLN H:132 , GLN H:133 , ILE H:153 , ALA H:179 , SER H:180 , VAL H:182 , TYR H:193 , LYS H:197 , PRO H:223 , GLY H:224 , PRO H:225 , ILE H:226 , THR H:228 , PRO H:229 , LEU H:230 , PHE H:243 , MG H:307 , HOH H:499 , HOH H:511 , HOH H:514
BINDING SITE FOR RESIDUE NAE H 311
10
CC6
SOFTWARE
THR E:143 , GLU H:106 , LYS H:110 , LYS H:163
BINDING SITE FOR RESIDUE CAC H 323
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3i3oa_ (A:)
1b: SCOP_d3i3ob_ (B:)
1c: SCOP_d3i3oc_ (C:)
1d: SCOP_d3i3od_ (D:)
1e: SCOP_d3i3oe_ (E:)
1f: SCOP_d3i3of_ (F:)
1g: SCOP_d3i3og_ (G:)
1h: SCOP_d3i3oh_ (H:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Bacillus anthracis [TaxId: 261594]
(4)
1a
d3i3oa_
A:
1b
d3i3ob_
B:
1c
d3i3oc_
C:
1d
d3i3od_
D:
1e
d3i3oe_
E:
1f
d3i3of_
F:
1g
d3i3og_
G:
1h
d3i3oh_
H:
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CATH Domains
(0, 0)
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Sorry, no Info available
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Pfam Domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (394 KB)
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