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3I3J
Asym. Unit
Info
Asym.Unit (501 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 10 (43 KB)
Biol.Unit 11 (44 KB)
Biol.Unit 12 (43 KB)
Biol.Unit 2 (43 KB)
Biol.Unit 3 (44 KB)
Biol.Unit 4 (43 KB)
Biol.Unit 5 (42 KB)
Biol.Unit 6 (41 KB)
Biol.Unit 7 (43 KB)
Biol.Unit 8 (44 KB)
Biol.Unit 9 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE BROMODOMAIN OF HUMAN EP300
Authors
:
P. Filippakopoulos, S. Picaud, C. Phillips, A. C. W. Pike, J. Muniz, A. R A. Chaikuad, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, J. Weigelt C. Bountra, S. Knapp
Date
:
30 Jun 09 (Deposition) - 28 Jul 09 (Release) - 08 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.33
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Biol. Unit 11: K (1x)
Biol. Unit 12: L (1x)
Keywords
:
Structural Genomics Bromodomain, P300, Consortium, Sgc, Structural Genomics Consortium, Bromodomain, Cell Cycle, Citrullination, Disease Mutation, Host-Virus Interaction, Metal-Binding, Methylation, Nucleus, Phosphoprotein, Transcription, Transcription Regulation, Transferase, Zinc-Finger
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Filippakopoulos, S. Picaud, M. Mangos, T. Keates, J. P. Lambert, D. Barsyte-Lovejoy, I. Felletar, R. Volkmer, S. Muller, T. Pawson, A. C. Gingras, C. H. Arrowsmith, S. Knapp
Histone Recognition And Large-Scale Structural Analysis Of The Human Bromodomain Family.
Cell(Cambridge, Mass. ) V. 149 214 2012
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: DI(HYDROXYETHYL)ETHER (PEGa)
2b: DI(HYDROXYETHYL)ETHER (PEGb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
3
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:1105 , LEU A:1106 , GLY A:1109 , GLN A:1110 , TYR A:1111
BINDING SITE FOR RESIDUE CL A 3
2
AC2
SOFTWARE
VAL A:1118 , TRP A:1122 , TYR E:1141
BINDING SITE FOR RESIDUE PEG A 1
3
AC3
SOFTWARE
HOH E:283 , ASP E:1119 , TRP E:1122
BINDING SITE FOR RESIDUE SO4 E 1
4
AC4
SOFTWARE
ARG E:1137 , TYR E:1141 , PRO G:1070 , LEU G:1073
BINDING SITE FOR RESIDUE CL E 2
5
AC5
SOFTWARE
ASP E:1088 , TYR E:1131 , ASN E:1132 , ARG E:1133 , SER E:1136
BINDING SITE FOR RESIDUE PEG E 1162
6
AC6
SOFTWARE
TYR H:1139 , ARG L:1133 , THR L:1135
BINDING SITE FOR RESIDUE SO4 L 2
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 24)
Info
All PROSITE Patterns/Profiles
1: BROMODOMAIN_2 (A:1067-1139,B:1067-1139,C:1067-113...)
2: BROMODOMAIN_1 (A:1072-1131,B:1072-1131,C:1072-113...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BROMODOMAIN_2
PS50014
Bromodomain profile.
EP300_HUMAN
1067-1139
12
A:1067-1139
B:1067-1139
C:1067-1139
D:1067-1139
E:1067-1139
F:1067-1139
G:1067-1139
H:1067-1139
I:1067-1139
J:1067-1139
K:1067-1139
L:1067-1139
2
BROMODOMAIN_1
PS00633
Bromodomain signature.
EP300_HUMAN
1072-1131
12
A:1072-1131
B:1072-1131
C:1072-1131
D:1072-1131
E:1072-1131
F:1072-1131
G:1072-1131
H:1072-1131
I:1072-1131
J:1072-1131
K:1072-1131
L:1072-1131
[
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]
Exons
(3, 35)
Info
All Exons
Exon 1.16 (A:1047-1048 | B:1048-1048 | C:1047...)
Exon 1.17 (A:1048-1087 | B:1048-1087 | C:1048...)
Exon 1.18 (A:1088-1160 | B:1088-1161 | C:1088...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.15/1.16
2: Boundary 1.16/1.17
3: Boundary 1.17/1.18
4: Boundary 1.18/1.19
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000263253
1
ENSE00001343011
chr22:
41487790-41489102
1313
EP300_HUMAN
1-32
32
0
-
-
1.2
ENST00000263253
2
ENSE00000654991
chr22:
41513191-41513825
635
EP300_HUMAN
32-243
212
0
-
-
1.3
ENST00000263253
3
ENSE00000655017
chr22:
41521868-41522044
177
EP300_HUMAN
244-302
59
0
-
-
1.4
ENST00000263253
4
ENSE00000655023
chr22:
41523491-41523752
262
EP300_HUMAN
303-390
88
0
-
-
1.5
ENST00000263253
5
ENSE00000655024
chr22:
41525894-41526007
114
EP300_HUMAN
390-428
39
0
-
-
1.6
ENST00000263253
6
ENSE00001336414
chr22:
41527392-41527637
246
EP300_HUMAN
428-510
83
0
-
-
1.7
ENST00000263253
7
ENSE00000655043
chr22:
41531817-41531910
94
EP300_HUMAN
510-541
32
0
-
-
1.8
ENST00000263253
8
ENSE00000655048
chr22:
41533657-41533794
138
EP300_HUMAN
541-587
47
0
-
-
1.9
ENST00000263253
9
ENSE00000655049
chr22:
41536144-41536261
118
EP300_HUMAN
587-626
40
0
-
-
1.10
ENST00000263253
10
ENSE00000655078
chr22:
41537052-41537226
175
EP300_HUMAN
627-685
59
0
-
-
1.11
ENST00000263253
11
ENSE00000655093
chr22:
41542743-41542820
78
EP300_HUMAN
685-711
27
0
-
-
1.12
ENST00000263253
12
ENSE00000655110
chr22:
41543841-41543950
110
EP300_HUMAN
711-747
37
0
-
-
1.13
ENST00000263253
13
ENSE00001336303
chr22:
41545042-41545179
138
EP300_HUMAN
748-793
46
0
-
-
1.14
ENST00000263253
14
ENSE00000655148
chr22:
41545765-41546202
438
EP300_HUMAN
794-939
146
0
-
-
1.15
ENST00000263253
15
ENSE00000880436
chr22:
41547837-41548016
180
EP300_HUMAN
940-999
60
0
-
-
1.16
ENST00000263253
16
ENSE00000880437
chr22:
41548210-41548354
145
EP300_HUMAN
1000-1048
49
11
A:1047-1048
B:1048-1048
C:1047-1048
D:1048-1048
E:1047-1048
-
G:1048-1048
H:1048-1048
I:1047-1048
J:1048-1048
K:1047-1048
L:1048-1048
2
1
2
1
2
-
1
1
2
1
2
1
1.17
ENST00000263253
17
ENSE00000880438
chr22:
41550999-41551117
119
EP300_HUMAN
1048-1087
40
12
A:1048-1087
B:1048-1087
C:1048-1087
D:1048-1087
E:1048-1087
F:1049-1087
G:1048-1087
H:1048-1087
I:1048-1087
J:1048-1087
K:1048-1087
L:1048-1087
40
40
40
40
40
39
40
40
40
40
40
40
1.18
ENST00000263253
18
ENSE00000655228
chr22:
41553173-41553412
240
EP300_HUMAN
1088-1167
80
12
A:1088-1160
B:1088-1161
C:1088-1160
D:1088-1160
E:1088-1161
F:1088-1159
G:1088-1160
H:1088-1160
I:1088-1161
J:1088-1160
K:1088-1160
L:1088-1160
73
74
73
73
74
72
73
73
74
73
73
73
1.19
ENST00000263253
19
ENSE00000655266
chr22:
41554416-41554504
89
EP300_HUMAN
1168-1197
30
0
-
-
1.20
ENST00000263253
20
ENSE00001302097
chr22:
41556646-41556726
81
EP300_HUMAN
1197-1224
28
0
-
-
1.21
ENST00000263253
21
ENSE00000655295
chr22:
41558727-41558783
57
EP300_HUMAN
1224-1243
20
0
-
-
1.22
ENST00000263253
22
ENSE00001307142
chr22:
41560057-41560134
78
EP300_HUMAN
1243-1269
27
0
-
-
1.23
ENST00000263253
23
ENSE00000655323
chr22:
41562603-41562670
68
EP300_HUMAN
1269-1292
24
0
-
-
1.24
ENST00000263253
24
ENSE00000655331
chr22:
41564453-41564603
151
EP300_HUMAN
1292-1342
51
0
-
-
1.25
ENST00000263253
25
ENSE00000655352
chr22:
41564725-41564871
147
EP300_HUMAN
1342-1391
50
0
-
-
1.26
ENST00000263253
26
ENSE00001730907
chr22:
41565507-41565620
114
EP300_HUMAN
1391-1429
39
0
-
-
1.27
ENST00000263253
27
ENSE00000655374
chr22:
41566410-41566575
166
EP300_HUMAN
1429-1484
56
0
-
-
1.28
ENST00000263253
28
ENSE00000655406
chr22:
41568503-41568667
165
EP300_HUMAN
1485-1539
55
0
-
-
1.29
ENST00000263253
29
ENSE00000655428
chr22:
41569627-41569788
162
EP300_HUMAN
1540-1593
54
0
-
-
1.30
ENST00000263253
30
ENSE00000655442
chr22:
41572251-41572532
282
EP300_HUMAN
1594-1687
94
0
-
-
1.31
ENST00000263253
31
ENSE00001177198
chr22:
41572777-41576081
3305
EP300_HUMAN
1688-2414
727
0
-
-
[
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]
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d3i3ja_ (A:)
1b: SCOP_d3i3jb_ (B:)
1c: SCOP_d3i3jc_ (C:)
1d: SCOP_d3i3jd_ (D:)
1e: SCOP_d3i3je_ (E:)
1f: SCOP_d3i3jf_ (F:)
1g: SCOP_d3i3jg_ (G:)
1h: SCOP_d3i3jh_ (H:)
1i: SCOP_d3i3ji_ (I:)
1j: SCOP_d3i3jj_ (J:)
1k: SCOP_d3i3jk_ (K:)
1l: SCOP_d3i3jl_ (L:)
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Classes
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(
)
Organisms
(
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Bromodomain
(203)
Family
:
Bromodomain
(34)
Protein domain
:
automated matches
(16)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d3i3ja_
A:
1b
d3i3jb_
B:
1c
d3i3jc_
C:
1d
d3i3jd_
D:
1e
d3i3je_
E:
1f
d3i3jf_
F:
1g
d3i3jg_
G:
1h
d3i3jh_
H:
1i
d3i3ji_
I:
1j
d3i3jj_
J:
1k
d3i3jk_
K:
1l
d3i3jl_
L:
[
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_3i3jE00 (E:1047-1161)
1b: CATH_3i3jI00 (I:1047-1161)
1c: CATH_3i3jA00 (A:1047-1160)
1d: CATH_3i3jB00 (B:1048-1161)
1e: CATH_3i3jC00 (C:1047-1160)
1f: CATH_3i3jK00 (K:1047-1160)
1g: CATH_3i3jD00 (D:1048-1160)
1h: CATH_3i3jG00 (G:1048-1160)
1i: CATH_3i3jH00 (H:1048-1160)
1j: CATH_3i3jJ00 (J:1048-1160)
1k: CATH_3i3jL00 (L:1048-1160)
1l: CATH_3i3jF00 (F:1049-1159)
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(
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Histone Acetyltransferase; Chain A
(22)
Homologous Superfamily
:
Histone Acetyltransferase; Chain A
(22)
Human (Homo sapiens)
(14)
1a
3i3jE00
E:1047-1161
1b
3i3jI00
I:1047-1161
1c
3i3jA00
A:1047-1160
1d
3i3jB00
B:1048-1161
1e
3i3jC00
C:1047-1160
1f
3i3jK00
K:1047-1160
1g
3i3jD00
D:1048-1160
1h
3i3jG00
G:1048-1160
1i
3i3jH00
H:1048-1160
1j
3i3jJ00
J:1048-1160
1k
3i3jL00
L:1048-1160
1l
3i3jF00
F:1049-1159
[
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Pfam Domains
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all PFAM domains
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