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3HYV
Biol. Unit 4
Info
Asym.Unit (438 KB)
Biol.Unit 1 (218 KB)
Biol.Unit 2 (218 KB)
Biol.Unit 3 (149 KB)
Biol.Unit 4 (149 KB)
Biol.Unit 5 (147 KB)
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(1)
Title
:
3-D X-RAY STRUCTURE OF THE SULFIDE:QUINONE OXIDOREDUCTASE FROM THE HYPERTHERMOPHILIC BACTERIUM AQUIFEX AEOLICUS
Authors
:
M. Marcia, U. Ermler, G. H. Peng, H. Michel
Date
:
23 Jun 09 (Deposition) - 14 Jul 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,C,E (1x)
Biol. Unit 2: B,D,F (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: E,F (1x)
Biol. Unit 5: C,D (1x)
Keywords
:
Protein Complex, Monotopic Membrane Protein, Flavoprotein, Rossmann- Fold Domain, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Marcia, U. Ermler, G. H. Peng, H. Michel
The Structure Of Aquifex Aeolicus Sulfide:Quinone Oxidoreductase, A Basis To Understand Sulfide Detoxificatio And Respiration
Proc. Natl. Acad. Sci. Usa V. 106 9625 2009
[
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Hetero Components
(7, 20)
Info
All Hetero Components
1a: S-MERCAPTOCYSTEINE (CSSa)
1b: S-MERCAPTOCYSTEINE (CSSb)
1c: S-MERCAPTOCYSTEINE (CSSc)
1d: S-MERCAPTOCYSTEINE (CSSd)
1e: S-MERCAPTOCYSTEINE (CSSe)
1f: S-MERCAPTOCYSTEINE (CSSf)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
2d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
2e: FLAVIN-ADENINE DINUCLEOTIDE (FADe)
2f: FLAVIN-ADENINE DINUCLEOTIDE (FADf)
3a: HYDROSULFURIC ACID (H2Sa)
3b: HYDROSULFURIC ACID (H2Sb)
3c: HYDROSULFURIC ACID (H2Sc)
3d: HYDROSULFURIC ACID (H2Sd)
3e: HYDROSULFURIC ACID (H2Se)
3f: HYDROSULFURIC ACID (H2Sf)
4a: DODECYL-BETA-D-MALTOSIDE (LMTa)
4b: DODECYL-BETA-D-MALTOSIDE (LMTb)
4c: DODECYL-BETA-D-MALTOSIDE (LMTc)
4d: DODECYL-BETA-D-MALTOSIDE (LMTd)
4e: DODECYL-BETA-D-MALTOSIDE (LMTe)
4f: DODECYL-BETA-D-MALTOSIDE (LMTf)
5a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
5b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
5c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
5d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
5e: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESe)
5f: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESf)
6a: OCTATHIOCANE (PS9a)
6b: OCTATHIOCANE (PS9b)
6c: OCTATHIOCANE (PS9c)
6d: OCTATHIOCANE (PS9d)
6e: OCTATHIOCANE (PS9e)
6f: OCTATHIOCANE (PS9f)
6g: OCTATHIOCANE (PS9g)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
7d: SULFATE ION (SO4d)
7e: SULFATE ION (SO4e)
7f: SULFATE ION (SO4f)
7g: SULFATE ION (SO4g)
7h: SULFATE ION (SO4h)
7i: SULFATE ION (SO4i)
7j: SULFATE ION (SO4j)
7k: SULFATE ION (SO4k)
7l: SULFATE ION (SO4l)
7m: SULFATE ION (SO4m)
7n: SULFATE ION (SO4n)
7o: SULFATE ION (SO4o)
7p: SULFATE ION (SO4p)
7q: SULFATE ION (SO4q)
7r: SULFATE ION (SO4r)
7s: SULFATE ION (SO4s)
7t: SULFATE ION (SO4t)
7u: SULFATE ION (SO4u)
7v: SULFATE ION (SO4v)
7w: SULFATE ION (SO4w)
7x: SULFATE ION (SO4x)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSS
2
Mod. Amino Acid
S-MERCAPTOCYSTEINE
2
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
H2S
2
Ligand/Ion
HYDROSULFURIC ACID
4
LMT
2
Ligand/Ion
DODECYL-BETA-D-MALTOSIDE
5
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6
PS9
2
Ligand/Ion
OCTATHIOCANE
7
SO4
8
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC6 (SOFTWARE)
02: CC1 (SOFTWARE)
03: CC6 (SOFTWARE)
04: EC2 (SOFTWARE)
05: EC3 (SOFTWARE)
06: EC4 (SOFTWARE)
07: EC5 (SOFTWARE)
08: EC6 (SOFTWARE)
09: EC7 (SOFTWARE)
10: EC8 (SOFTWARE)
11: EC9 (SOFTWARE)
12: FC1 (SOFTWARE)
13: FC2 (SOFTWARE)
14: FC3 (SOFTWARE)
15: FC4 (SOFTWARE)
16: FC5 (SOFTWARE)
17: FC6 (SOFTWARE)
18: FC7 (SOFTWARE)
19: FC8 (SOFTWARE)
20: FC9 (SOFTWARE)
21: GC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
ARG A:369 , LYS E:172
BINDING SITE FOR RESIDUE SO4 A 431
02
CC1
SOFTWARE
LYS B:172 , MES B:900 , ARG F:369
BINDING SITE FOR RESIDUE SO4 B 435
03
CC6
SOFTWARE
HIS C:168 , TYR C:169 , LYS C:172 , ARG C:213 , GLU C:353 , ASP C:354 , LYS C:376 , HOH C:475 , HOH C:486 , SO4 E:435
BINDING SITE FOR RESIDUE MES C 900
04
EC2
SOFTWARE
LYS C:172 , MES C:900 , ARG E:369
BINDING SITE FOR RESIDUE SO4 E 435
05
EC3
SOFTWARE
ILE E:8 , GLY E:9 , GLY E:10 , GLY E:11 , VAL E:12 , GLY E:13 , SER E:34 , ASP E:35 , ARG E:36 , THR E:42 , PRO E:43 , LYS E:77 , ALA E:78 , THR E:105 , GLY E:106 , ILE E:123 , CYS E:124 , PRO E:159 , GLY E:293 , VAL E:294 , LYS E:312 , THR E:313 , GLY E:314 , ILE E:317 , CYS E:347 , LYS E:382 , SO4 E:433 , HOH E:448 , HOH E:461 , HOH E:481 , H2S E:700 , HOH E:792 , PS9 E:800
BINDING SITE FOR RESIDUE FAD E 441
06
EC4
SOFTWARE
LYS E:373 , TRP E:377 , LEU E:411 , SO4 E:434 , LMT F:600
BINDING SITE FOR RESIDUE LMT E 600
07
EC5
SOFTWARE
CYS E:124 , FAD E:441
BINDING SITE FOR RESIDUE H2S E 700
08
EC6
SOFTWARE
CSS E:156 , PHE E:157 , GLY E:158 , PRO E:159 , CYS E:347 , FAD E:441
BINDING SITE FOR RESIDUE PS9 E 800
09
EC7
SOFTWARE
HIS E:168 , TYR E:169 , LYS E:172 , GLU E:353 , ASP E:354
BINDING SITE FOR RESIDUE MES E 900
10
EC8
SOFTWARE
TRP E:391 , ARG E:394 , ASN E:395 , SER F:401
BINDING SITE FOR RESIDUE SO4 E 432
11
EC9
SOFTWARE
LYS E:77 , LYS E:108 , PRO E:257 , GLU E:258 , VAL E:259 , FAD E:441
BINDING SITE FOR RESIDUE SO4 E 433
12
FC1
SOFTWARE
GLY E:375 , LYS E:376 , TRP E:377 , LMT E:600
BINDING SITE FOR RESIDUE SO4 E 434
13
FC2
SOFTWARE
SER E:401 , TRP F:391 , ASN F:395
BINDING SITE FOR RESIDUE SO4 E 431
14
FC3
SOFTWARE
ARG D:369 , LYS F:172 , MES F:900
BINDING SITE FOR RESIDUE SO4 F 431
15
FC4
SOFTWARE
GLY F:9 , GLY F:10 , GLY F:11 , VAL F:12 , GLY F:13 , SER F:34 , ASP F:35 , ARG F:36 , THR F:42 , PRO F:43 , LYS F:77 , ALA F:78 , THR F:105 , GLY F:106 , ILE F:123 , CYS F:124 , PRO F:159 , GLY F:293 , VAL F:294 , LYS F:312 , THR F:313 , GLY F:314 , ILE F:317 , LYS F:382 , SO4 F:433 , HOH F:453 , HOH F:512 , HOH F:689 , HOH F:690 , H2S F:700 , PS9 F:800
BINDING SITE FOR RESIDUE FAD F 441
16
FC5
SOFTWARE
LMT E:600 , LYS F:373 , TRP F:377 , SO4 F:434
BINDING SITE FOR RESIDUE LMT F 600
17
FC6
SOFTWARE
CYS F:124 , FAD F:441
BINDING SITE FOR RESIDUE H2S F 700
18
FC7
SOFTWARE
CSS F:156 , GLY F:158 , PRO F:159 , CYS F:347 , FAD F:441
BINDING SITE FOR RESIDUE PS9 F 800
19
FC8
SOFTWARE
HIS F:168 , TYR F:169 , LYS F:172 , ARG F:213 , GLU F:353 , ASP F:354 , SO4 F:431
BINDING SITE FOR RESIDUE MES F 900
20
FC9
SOFTWARE
LYS F:77 , LYS F:108 , PRO F:257 , GLU F:258 , VAL F:259 , FAD F:441
BINDING SITE FOR RESIDUE SO4 F 433
21
GC1
SOFTWARE
GLY F:375 , LYS F:376 , TRP F:377 , LMT F:600
BINDING SITE FOR RESIDUE SO4 F 434
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
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SCOP Domains
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CATH Domains
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Pfam Domains
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