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3HYV
Asym. Unit
Info
Asym.Unit (438 KB)
Biol.Unit 1 (218 KB)
Biol.Unit 2 (218 KB)
Biol.Unit 3 (149 KB)
Biol.Unit 4 (149 KB)
Biol.Unit 5 (147 KB)
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(1)
Title
:
3-D X-RAY STRUCTURE OF THE SULFIDE:QUINONE OXIDOREDUCTASE FROM THE HYPERTHERMOPHILIC BACTERIUM AQUIFEX AEOLICUS
Authors
:
M. Marcia, U. Ermler, G. H. Peng, H. Michel
Date
:
23 Jun 09 (Deposition) - 14 Jul 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,C,E (1x)
Biol. Unit 2: B,D,F (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: E,F (1x)
Biol. Unit 5: C,D (1x)
Keywords
:
Protein Complex, Monotopic Membrane Protein, Flavoprotein, Rossmann- Fold Domain, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Marcia, U. Ermler, G. H. Peng, H. Michel
The Structure Of Aquifex Aeolicus Sulfide:Quinone Oxidoreductase, A Basis To Understand Sulfide Detoxificatio And Respiration
Proc. Natl. Acad. Sci. Usa V. 106 9625 2009
[
close entry info
]
Hetero Components
(7, 61)
Info
All Hetero Components
1a: S-MERCAPTOCYSTEINE (CSSa)
1b: S-MERCAPTOCYSTEINE (CSSb)
1c: S-MERCAPTOCYSTEINE (CSSc)
1d: S-MERCAPTOCYSTEINE (CSSd)
1e: S-MERCAPTOCYSTEINE (CSSe)
1f: S-MERCAPTOCYSTEINE (CSSf)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
2b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
2d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
2e: FLAVIN-ADENINE DINUCLEOTIDE (FADe)
2f: FLAVIN-ADENINE DINUCLEOTIDE (FADf)
3a: HYDROSULFURIC ACID (H2Sa)
3b: HYDROSULFURIC ACID (H2Sb)
3c: HYDROSULFURIC ACID (H2Sc)
3d: HYDROSULFURIC ACID (H2Sd)
3e: HYDROSULFURIC ACID (H2Se)
3f: HYDROSULFURIC ACID (H2Sf)
4a: DODECYL-BETA-D-MALTOSIDE (LMTa)
4b: DODECYL-BETA-D-MALTOSIDE (LMTb)
4c: DODECYL-BETA-D-MALTOSIDE (LMTc)
4d: DODECYL-BETA-D-MALTOSIDE (LMTd)
4e: DODECYL-BETA-D-MALTOSIDE (LMTe)
4f: DODECYL-BETA-D-MALTOSIDE (LMTf)
5a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
5b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
5c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
5d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
5e: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESe)
5f: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESf)
6a: OCTATHIOCANE (PS9a)
6b: OCTATHIOCANE (PS9b)
6c: OCTATHIOCANE (PS9c)
6d: OCTATHIOCANE (PS9d)
6e: OCTATHIOCANE (PS9e)
6f: OCTATHIOCANE (PS9f)
6g: OCTATHIOCANE (PS9g)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
7d: SULFATE ION (SO4d)
7e: SULFATE ION (SO4e)
7f: SULFATE ION (SO4f)
7g: SULFATE ION (SO4g)
7h: SULFATE ION (SO4h)
7i: SULFATE ION (SO4i)
7j: SULFATE ION (SO4j)
7k: SULFATE ION (SO4k)
7l: SULFATE ION (SO4l)
7m: SULFATE ION (SO4m)
7n: SULFATE ION (SO4n)
7o: SULFATE ION (SO4o)
7p: SULFATE ION (SO4p)
7q: SULFATE ION (SO4q)
7r: SULFATE ION (SO4r)
7s: SULFATE ION (SO4s)
7t: SULFATE ION (SO4t)
7u: SULFATE ION (SO4u)
7v: SULFATE ION (SO4v)
7w: SULFATE ION (SO4w)
7x: SULFATE ION (SO4x)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSS
6
Mod. Amino Acid
S-MERCAPTOCYSTEINE
2
FAD
6
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
H2S
6
Ligand/Ion
HYDROSULFURIC ACID
4
LMT
6
Ligand/Ion
DODECYL-BETA-D-MALTOSIDE
5
MES
6
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6
PS9
7
Ligand/Ion
OCTATHIOCANE
7
SO4
24
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(55, 55)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:8 , GLY A:9 , GLY A:10 , GLY A:11 , VAL A:12 , GLY A:13 , SER A:34 , ASP A:35 , ARG A:36 , THR A:42 , PRO A:43 , LYS A:77 , ALA A:78 , ALA A:104 , THR A:105 , GLY A:106 , ILE A:123 , CYS A:124 , PRO A:159 , GLY A:293 , VAL A:294 , LYS A:312 , THR A:313 , GLY A:314 , ILE A:317 , LYS A:382 , SO4 A:433 , HOH A:437 , HOH A:440 , HOH A:447 , HOH A:449 , HOH A:459 , HOH A:485 , HOH A:529 , H2S A:700 , PS9 A:800
BINDING SITE FOR RESIDUE FAD A 441
02
AC2
SOFTWARE
TRP A:377 , PHE A:381 , VAL A:406 , SO4 A:434 , LMT B:600
BINDING SITE FOR RESIDUE LMT A 600
03
AC3
SOFTWARE
CYS A:124 , FAD A:441
BINDING SITE FOR RESIDUE H2S A 700
04
AC4
SOFTWARE
CSS A:156 , PHE A:157 , GLY A:158 , PRO A:159 , CYS A:347 , ILE A:348 , FAD A:441
BINDING SITE FOR RESIDUE PS9 A 800
05
AC5
SOFTWARE
HIS A:168 , TYR A:169 , LYS A:172 , ASP A:354 , HOH A:483 , SO4 C:431
BINDING SITE FOR RESIDUE MES A 900
06
AC6
SOFTWARE
ARG A:369 , LYS E:172
BINDING SITE FOR RESIDUE SO4 A 431
07
AC7
SOFTWARE
TRP A:391 , ARG A:394 , ASN A:395 , SER B:401
BINDING SITE FOR RESIDUE SO4 A 432
08
AC8
SOFTWARE
LYS A:77 , LYS A:108 , PRO A:257 , GLU A:258 , VAL A:259 , FAD A:441
BINDING SITE FOR RESIDUE SO4 A 433
09
AC9
SOFTWARE
GLY A:375 , LYS A:376 , TRP A:377 , LMT A:600
BINDING SITE FOR RESIDUE SO4 A 434
10
BC1
SOFTWARE
ILE B:8 , GLY B:9 , GLY B:10 , GLY B:11 , VAL B:12 , GLY B:13 , SER B:34 , ASP B:35 , ARG B:36 , THR B:42 , PRO B:43 , LYS B:77 , ALA B:78 , ALA B:104 , THR B:105 , GLY B:106 , ILE B:123 , CYS B:124 , PRO B:159 , GLY B:293 , VAL B:294 , LYS B:312 , THR B:313 , GLY B:314 , ILE B:317 , LYS B:382 , SO4 B:433 , HOH B:459 , HOH B:471 , HOH B:492 , HOH B:493 , H2S B:700 , HOH B:705 , HOH B:769 , PS9 B:800
BINDING SITE FOR RESIDUE FAD B 441
11
BC2
SOFTWARE
LMT A:600 , LYS B:373 , TRP B:377 , PHE B:381 , SO4 B:434
BINDING SITE FOR RESIDUE LMT B 600
12
BC3
SOFTWARE
CYS B:124 , FAD B:441
BINDING SITE FOR RESIDUE H2S B 700
13
BC4
SOFTWARE
CSS B:156 , GLY B:158 , CYS B:347 , ALA B:349 , FAD B:441
BINDING SITE FOR RESIDUE PS9 B 800
14
BC5
SOFTWARE
HIS B:168 , TYR B:169 , LYS B:172 , ARG B:213 , GLU B:353 , ASP B:354 , SO4 B:435 , HOH B:661
BINDING SITE FOR RESIDUE MES B 900
15
BC6
SOFTWARE
ARG B:369 , LYS D:172 , MES D:900
BINDING SITE FOR RESIDUE SO4 B 431
16
BC7
SOFTWARE
SER A:401 , TRP B:391 , ARG B:394 , ASN B:395
BINDING SITE FOR RESIDUE SO4 B 432
17
BC8
SOFTWARE
LYS B:77 , PRO B:257 , GLU B:258 , VAL B:259 , FAD B:441
BINDING SITE FOR RESIDUE SO4 B 433
18
BC9
SOFTWARE
GLY B:375 , LYS B:376 , TRP B:377 , LMT B:600
BINDING SITE FOR RESIDUE SO4 B 434
19
CC1
SOFTWARE
LYS B:172 , MES B:900 , ARG F:369
BINDING SITE FOR RESIDUE SO4 B 435
20
CC2
SOFTWARE
GLY C:9 , GLY C:10 , GLY C:11 , VAL C:12 , GLY C:13 , SER C:34 , ASP C:35 , ARG C:36 , THR C:42 , PRO C:43 , LYS C:77 , ALA C:78 , ALA C:104 , THR C:105 , GLY C:106 , ILE C:123 , CYS C:124 , PRO C:159 , GLY C:293 , VAL C:294 , THR C:313 , GLY C:314 , ILE C:317 , LYS C:382 , SO4 C:433 , HOH C:438 , HOH C:599 , HOH C:682 , H2S C:700 , HOH C:802
BINDING SITE FOR RESIDUE FAD C 441
21
CC3
SOFTWARE
LYS C:373 , PHE C:381 , VAL C:406 , LEU C:407 , SO4 C:434 , LMT D:600
BINDING SITE FOR RESIDUE LMT C 600
22
CC4
SOFTWARE
CYS C:124 , FAD C:441
BINDING SITE FOR RESIDUE H2S C 700
23
CC5
SOFTWARE
CSS C:156 , GLY C:158 , PRO C:159 , ILE C:348
BINDING SITE FOR RESIDUE PS9 C 800
24
CC6
SOFTWARE
HIS C:168 , TYR C:169 , LYS C:172 , ARG C:213 , GLU C:353 , ASP C:354 , LYS C:376 , HOH C:475 , HOH C:486 , SO4 E:435
BINDING SITE FOR RESIDUE MES C 900
25
CC7
SOFTWARE
LYS A:172 , MES A:900 , ARG C:369
BINDING SITE FOR RESIDUE SO4 C 431
26
CC8
SOFTWARE
TRP C:391 , ARG C:394 , ASN C:395 , SER D:401
BINDING SITE FOR RESIDUE SO4 C 432
27
CC9
SOFTWARE
LYS C:77 , LYS C:108 , PRO C:257 , GLU C:258 , VAL C:259 , FAD C:441 , HOH C:456
BINDING SITE FOR RESIDUE SO4 C 433
28
DC1
SOFTWARE
GLY C:375 , LYS C:376 , TRP C:377 , LMT C:600 , HOH C:625
BINDING SITE FOR RESIDUE SO4 C 434
29
DC2
SOFTWARE
GLY D:9 , GLY D:10 , GLY D:11 , VAL D:12 , GLY D:13 , SER D:34 , ASP D:35 , ARG D:36 , THR D:42 , PRO D:43 , LYS D:77 , ALA D:78 , THR D:105 , GLY D:106 , ILE D:123 , CYS D:124 , PRO D:159 , GLY D:293 , VAL D:294 , LYS D:312 , THR D:313 , GLY D:314 , LYS D:382 , HOH D:455 , HOH D:461 , H2S D:700 , HOH D:803
BINDING SITE FOR RESIDUE FAD D 441
30
DC3
SOFTWARE
PHE C:381 , LMT C:600 , LYS D:373 , PHE D:381 , SO4 D:434
BINDING SITE FOR RESIDUE LMT D 600
31
DC4
SOFTWARE
CYS D:124 , FAD D:441
BINDING SITE FOR RESIDUE H2S D 700
32
DC5
SOFTWARE
CSS D:156 , PHE D:157 , GLY D:158 , PS9 D:802
BINDING SITE FOR RESIDUE PS9 D 800
33
DC6
SOFTWARE
CYS D:347 , PS9 D:800
BINDING SITE FOR RESIDUE PS9 D 802
34
DC7
SOFTWARE
SO4 B:431 , HIS D:168 , LYS D:172 , ARG D:213 , GLU D:353 , ASP D:354 , HOH D:452
BINDING SITE FOR RESIDUE MES D 900
35
DC8
SOFTWARE
SER C:401 , TRP D:391 , ARG D:394 , ASN D:395
BINDING SITE FOR RESIDUE SO4 D 432
36
DC9
SOFTWARE
LYS D:77 , LYS D:108 , PRO D:257 , GLU D:258 , VAL D:259
BINDING SITE FOR RESIDUE SO4 D 433
37
EC1
SOFTWARE
GLY D:375 , LYS D:376 , TRP D:377 , LMT D:600
BINDING SITE FOR RESIDUE SO4 D 434
38
EC2
SOFTWARE
LYS C:172 , MES C:900 , ARG E:369
BINDING SITE FOR RESIDUE SO4 E 435
39
EC3
SOFTWARE
ILE E:8 , GLY E:9 , GLY E:10 , GLY E:11 , VAL E:12 , GLY E:13 , SER E:34 , ASP E:35 , ARG E:36 , THR E:42 , PRO E:43 , LYS E:77 , ALA E:78 , THR E:105 , GLY E:106 , ILE E:123 , CYS E:124 , PRO E:159 , GLY E:293 , VAL E:294 , LYS E:312 , THR E:313 , GLY E:314 , ILE E:317 , CYS E:347 , LYS E:382 , SO4 E:433 , HOH E:448 , HOH E:461 , HOH E:481 , H2S E:700 , HOH E:792 , PS9 E:800
BINDING SITE FOR RESIDUE FAD E 441
40
EC4
SOFTWARE
LYS E:373 , TRP E:377 , LEU E:411 , SO4 E:434 , LMT F:600
BINDING SITE FOR RESIDUE LMT E 600
41
EC5
SOFTWARE
CYS E:124 , FAD E:441
BINDING SITE FOR RESIDUE H2S E 700
42
EC6
SOFTWARE
CSS E:156 , PHE E:157 , GLY E:158 , PRO E:159 , CYS E:347 , FAD E:441
BINDING SITE FOR RESIDUE PS9 E 800
43
EC7
SOFTWARE
HIS E:168 , TYR E:169 , LYS E:172 , GLU E:353 , ASP E:354
BINDING SITE FOR RESIDUE MES E 900
44
EC8
SOFTWARE
TRP E:391 , ARG E:394 , ASN E:395 , SER F:401
BINDING SITE FOR RESIDUE SO4 E 432
45
EC9
SOFTWARE
LYS E:77 , LYS E:108 , PRO E:257 , GLU E:258 , VAL E:259 , FAD E:441
BINDING SITE FOR RESIDUE SO4 E 433
46
FC1
SOFTWARE
GLY E:375 , LYS E:376 , TRP E:377 , LMT E:600
BINDING SITE FOR RESIDUE SO4 E 434
47
FC2
SOFTWARE
SER E:401 , TRP F:391 , ASN F:395
BINDING SITE FOR RESIDUE SO4 E 431
48
FC3
SOFTWARE
ARG D:369 , LYS F:172 , MES F:900
BINDING SITE FOR RESIDUE SO4 F 431
49
FC4
SOFTWARE
GLY F:9 , GLY F:10 , GLY F:11 , VAL F:12 , GLY F:13 , SER F:34 , ASP F:35 , ARG F:36 , THR F:42 , PRO F:43 , LYS F:77 , ALA F:78 , THR F:105 , GLY F:106 , ILE F:123 , CYS F:124 , PRO F:159 , GLY F:293 , VAL F:294 , LYS F:312 , THR F:313 , GLY F:314 , ILE F:317 , LYS F:382 , SO4 F:433 , HOH F:453 , HOH F:512 , HOH F:689 , HOH F:690 , H2S F:700 , PS9 F:800
BINDING SITE FOR RESIDUE FAD F 441
50
FC5
SOFTWARE
LMT E:600 , LYS F:373 , TRP F:377 , SO4 F:434
BINDING SITE FOR RESIDUE LMT F 600
51
FC6
SOFTWARE
CYS F:124 , FAD F:441
BINDING SITE FOR RESIDUE H2S F 700
52
FC7
SOFTWARE
CSS F:156 , GLY F:158 , PRO F:159 , CYS F:347 , FAD F:441
BINDING SITE FOR RESIDUE PS9 F 800
53
FC8
SOFTWARE
HIS F:168 , TYR F:169 , LYS F:172 , ARG F:213 , GLU F:353 , ASP F:354 , SO4 F:431
BINDING SITE FOR RESIDUE MES F 900
54
FC9
SOFTWARE
LYS F:77 , LYS F:108 , PRO F:257 , GLU F:258 , VAL F:259 , FAD F:441
BINDING SITE FOR RESIDUE SO4 F 433
55
GC1
SOFTWARE
GLY F:375 , LYS F:376 , TRP F:377 , LMT F:600
BINDING SITE FOR RESIDUE SO4 F 434
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Exons
(0, 0)
Info
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CATH Domains
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Asym.Unit (438 KB)
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