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3HYG
Biol. Unit 2
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Asym.Unit (88 KB)
Biol.Unit 1 (42 KB)
Biol.Unit 2 (43 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF ADAMTS-5 IN COMPLEX WITH AN AMINO-2-INDANOL COMPOUND
Authors
:
H. -S. Shieh, J. M. Williams, N. Caspers, K. J. Mathis, M. D. Tortorella, A. Tomasselli
Date
:
22 Jun 09 (Deposition) - 07 Jul 09 (Release) - 15 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Alpha/Beta Structure, Central Five Stranded Beta-Sheet, Cleavage On Pair Of Basic Residues, Disulfide Bond, Extracellular Matrix, Glycoprotein, Hydrolase, Metal- Binding, Metalloprotease, Polymorphism, Protease, Secreted, Zinc, Zymogen
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Tortorella, A. G. Tomasselli, K. J. Mathis, M. E. Schnute, S. S. Woodard, G. Munie, J. M. Williams, N. Caspers, A. J. Wittwer, A. M. Malfait, H. S. Shieh
Structural And Inhibition Analysis Reveals The Mechanism Of Selectivity Of A Series Of Aggrecanase Inhibitors
J. Biol. Chem. V. 284 24185 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: (2R)-N~4~-HYDROXY-2-(3-HYDROXYBENZ... (099a)
1b: (2R)-N~4~-HYDROXY-2-(3-HYDROXYBENZ... (099b)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
099
1
Ligand/Ion
(2R)-N~4~-HYDROXY-2-(3-HYDROXYBENZYL)-N~1~-[(1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YL]BUTANEDIAMIDE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(5, 5)
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All Sites
1: AC6 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
4: AC9 (SOFTWARE)
5: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
HIS B:410 , HIS B:414 , HIS B:420 , 099 B:801
BINDING SITE FOR RESIDUE ZN B 901
2
AC7
SOFTWARE
GLU B:270 , ASP B:353 , ASP B:360 , CYS B:471 , ASP B:474 , HOH B:6010
BINDING SITE FOR RESIDUE CA B 902
3
AC8
SOFTWARE
GLU B:270 , ASP B:353 , ASP B:474 , HOH B:6037 , HOH B:6119
BINDING SITE FOR RESIDUE CA B 903
4
AC9
SOFTWARE
ASP B:369 , LEU B:370 , CYS B:376 , THR B:378 , GLU B:398 , HOH B:6009
BINDING SITE FOR RESIDUE CA B 904
5
BC1
SOFTWARE
ASP B:377 , THR B:378 , LEU B:379 , GLY B:380 , THR B:407 , HIS B:410 , GLU B:411 , HIS B:414 , HIS B:420 , LEU B:438 , SER B:440 , SER B:441 , LEU B:443 , ZN B:901 , HOH B:6023 , HOH B:6039 , HOH B:6085
BINDING SITE FOR RESIDUE 099 B 801
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
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All PROSITE Patterns/Profiles
1: ADAM_MEPRO (B:267-476)
2: ZINC_PROTEASE (B:407-416)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADAM_MEPRO
PS50215
ADAM type metalloprotease domain profile.
ATS5_HUMAN
267-476
1
-
B:267-476
2
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ATS5_HUMAN
407-416
1
-
B:407-416
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Exons
(0, 0)
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SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d3hyga_ (A:)
1b: SCOP_d3hygb_ (B:)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Human (Homo sapiens) [TaxId: 9606]
(22)
1a
d3hyga_
A:
1b
d3hygb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (88 KB)
Header - Asym.Unit
Biol.Unit 1 (42 KB)
Header - Biol.Unit 1
Biol.Unit 2 (43 KB)
Header - Biol.Unit 2
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