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3HYG
Asym. Unit
Info
Asym.Unit (88 KB)
Biol.Unit 1 (42 KB)
Biol.Unit 2 (43 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF ADAMTS-5 IN COMPLEX WITH AN AMINO-2-INDANOL COMPOUND
Authors
:
H. -S. Shieh, J. M. Williams, N. Caspers, K. J. Mathis, M. D. Tortorella, A. Tomasselli
Date
:
22 Jun 09 (Deposition) - 07 Jul 09 (Release) - 15 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Alpha/Beta Structure, Central Five Stranded Beta-Sheet, Cleavage On Pair Of Basic Residues, Disulfide Bond, Extracellular Matrix, Glycoprotein, Hydrolase, Metal- Binding, Metalloprotease, Polymorphism, Protease, Secreted, Zinc, Zymogen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Tortorella, A. G. Tomasselli, K. J. Mathis, M. E. Schnute, S. S. Woodard, G. Munie, J. M. Williams, N. Caspers, A. J. Wittwer, A. M. Malfait, H. S. Shieh
Structural And Inhibition Analysis Reveals The Mechanism Of Selectivity Of A Series Of Aggrecanase Inhibitors
J. Biol. Chem. V. 284 24185 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: (2R)-N~4~-HYDROXY-2-(3-HYDROXYBENZ... (099a)
1b: (2R)-N~4~-HYDROXY-2-(3-HYDROXYBENZ... (099b)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
099
2
Ligand/Ion
(2R)-N~4~-HYDROXY-2-(3-HYDROXYBENZYL)-N~1~-[(1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YL]BUTANEDIAMIDE
2
CA
6
Ligand/Ion
CALCIUM ION
3
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:410 , HIS A:414 , HIS A:420 , 099 A:801
BINDING SITE FOR RESIDUE ZN A 901
02
AC2
SOFTWARE
GLU A:270 , ASP A:353 , ASP A:360 , CYS A:471 , ASP A:474 , HOH A:5001
BINDING SITE FOR RESIDUE CA A 902
03
AC3
SOFTWARE
GLU A:270 , ASP A:353 , ASP A:474 , HOH A:5014 , HOH A:5018
BINDING SITE FOR RESIDUE CA A 903
04
AC4
SOFTWARE
ASP A:369 , LEU A:370 , CYS A:376 , THR A:378 , GLU A:398 , HOH A:5030
BINDING SITE FOR RESIDUE CA A 904
05
AC5
SOFTWARE
ASP A:377 , THR A:378 , LEU A:379 , GLY A:380 , THR A:407 , HIS A:410 , GLU A:411 , HIS A:414 , HIS A:420 , LEU A:438 , SER A:440 , SER A:441 , ILE A:442 , LEU A:443 , ZN A:901 , HOH A:5023 , HOH A:5025 , HOH A:5131
BINDING SITE FOR RESIDUE 099 A 801
06
AC6
SOFTWARE
HIS B:410 , HIS B:414 , HIS B:420 , 099 B:801
BINDING SITE FOR RESIDUE ZN B 901
07
AC7
SOFTWARE
GLU B:270 , ASP B:353 , ASP B:360 , CYS B:471 , ASP B:474 , HOH B:6010
BINDING SITE FOR RESIDUE CA B 902
08
AC8
SOFTWARE
GLU B:270 , ASP B:353 , ASP B:474 , HOH B:6037 , HOH B:6119
BINDING SITE FOR RESIDUE CA B 903
09
AC9
SOFTWARE
ASP B:369 , LEU B:370 , CYS B:376 , THR B:378 , GLU B:398 , HOH B:6009
BINDING SITE FOR RESIDUE CA B 904
10
BC1
SOFTWARE
ASP B:377 , THR B:378 , LEU B:379 , GLY B:380 , THR B:407 , HIS B:410 , GLU B:411 , HIS B:414 , HIS B:420 , LEU B:438 , SER B:440 , SER B:441 , LEU B:443 , ZN B:901 , HOH B:6023 , HOH B:6039 , HOH B:6085
BINDING SITE FOR RESIDUE 099 B 801
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ADAM_MEPRO (A:267-476,B:267-476)
2: ZINC_PROTEASE (A:407-416,B:407-416)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADAM_MEPRO
PS50215
ADAM type metalloprotease domain profile.
ATS5_HUMAN
267-476
2
A:267-476
B:267-476
2
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ATS5_HUMAN
407-416
2
A:407-416
B:407-416
[
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Exons
(4, 8)
Info
All Exons
Exon 1.1 (A:264-368 | B:264-368)
Exon 1.2 (A:369-413 | B:369-413)
Exon 1.3 (A:413-469 | B:413-469)
Exon 1.4 (A:469-480 | B:469-480)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000284987
1
ENSE00001017391
chr21:
28338832-28337607
1226
ATS5_HUMAN
1-368
368
2
A:264-368
B:264-368
105
105
1.2
ENST00000284987
2
ENSE00001017390
chr21:
28327190-28327058
133
ATS5_HUMAN
369-413
45
2
A:369-413
B:369-413
45
45
1.3
ENST00000284987
3
ENSE00001017386
chr21:
28315866-28315699
168
ATS5_HUMAN
413-469
57
2
A:413-469
B:413-469
57
57
1.4
ENST00000284987
4
ENSE00001017392
chr21:
28307068-28306785
284
ATS5_HUMAN
469-563
95
2
A:469-480
B:469-480
12
12
1.5
ENST00000284987
5
ENSE00001017389
chr21:
28305363-28305180
184
ATS5_HUMAN
564-625
62
0
-
-
1.6
ENST00000284987
6
ENSE00001017388
chr21:
28304498-28304323
176
ATS5_HUMAN
625-683
59
0
-
-
1.7
ENST00000284987
7
ENSE00001017393
chr21:
28302380-28302205
176
ATS5_HUMAN
684-742
59
0
-
-
1.8
ENST00000284987
8
ENSE00001017387
chr21:
28296939-28290231
6709
ATS5_HUMAN
742-930
189
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3hyga_ (A:)
1b: SCOP_d3hygb_ (B:)
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Human (Homo sapiens) [TaxId: 9606]
(22)
1a
d3hyga_
A:
1b
d3hygb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (88 KB)
Header - Asym.Unit
Biol.Unit 1 (42 KB)
Header - Biol.Unit 1
Biol.Unit 2 (43 KB)
Header - Biol.Unit 2
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